Genetic diversity and demographical history of Coilia ectenes (Clupeiformes: Engraulidae) inferred from the complete control region sequences of mitochondrial DNA

文献类型： 外文期刊

第一作者： Ma, Chunyan

作者： Ma, Chunyan;Cheng, Qiqun;Zhang, Qingyi

作者机构：

关键词： Coilia ectenes;Control region;Genetic diversity;Mitochondrial DNA;Population genetics

期刊名称：MITOCHONDRIAL DNA （ 影响因子：0.925； 五年影响因子：0.994 ）

ISSN：

年卷期：

页码：

收录情况： SCI

摘要： Coilia ectenes is a commercially important fishery species. In this study, genetic diversity and population structure of C. ectenes were examined by using mitochondrial DNA control region sequences in 246 individuals sampled from 10 localities in China. One hundred and ninety-five polymorphic sites defined 184 distinct haplotypes, revealing a moderately high haplotype diversity (Hd) and a relatively low nucleotide diversity (π) in the 10 localities. An excess of unique haplotypes at most sample locations were detected, which might influence the genetic structure of the C. ectenes populations. Hd ranged from 0.939 to 1.000 and π ranged from 0.26% to 1.15%. The Dongting fish population had the highest π level. The genetic distances ranged from 0.26% to 1.03% within populations and from 0.56% to 4.90% between populations. The distances between the Fuzhou (FZ) population and other populations were mostly >4.8%. Neighbor-joining tree indicated distinct patterns of phylogeographic structure among haplotypes from FZ population and those from other populations. Analyses of molecular variance and Fst statistics suggested that the divergence existed among populations from 10 localities, indicating that gene flow might be restricted among those regions, despite the wide dispersal. In addition, neutral tests and analysis of mismatch distribution suggested that C. ectenes might have undergone a population expansion. Our study revealed the extant population genetic diversity and structure of the C. ectenes, and was in favor of the related fishery management issues including fishery stock identification and conservation.

分类号： Q81

  • 相关文献

[1]Genetic diversity and population structure of yellow catfish Pelteobagrus fulvidraco from five lakes in the middle and lower reaches of the Yangtze River, China, based on mitochondrial DNA control region. Zhong, Liqiang,Wang, Minghua,Chen, Youming,Qin, Qin,Pan, Jianlin,Chen, Xiaohui,Song, Chao.

[2]Genetic structure and differentiation of four lake populations of Coilia ectenes (Clupeiformes: Engraulidae) based on mtDNA control region sequences. Cheng, Qiqun,Zhang, Qingyi,Ma, Chunyan,Guan, Weibing.

[3]Structure of mitochondrial DNA control region of Pholis fangi and its phylogenetic implication. Li Lin,Zhang Hui,Gao Tianxiang,Sun Dianrong. 2014

[4]High occurrence of length heteroplasmy in domestic Bactrian camel (Camelus bactrianus). He, Xiaohong,Chen, Xiaofei,Pu, Yabin,Song, Shen,Dong, Kunzhe,Zhao, Qianjun,Guan, Weijun,Ma, Yuehui,Jiang, Lin,He, Xiaohong,Chen, Xiaofei,Pu, Yabin,Song, Shen,Han, Jianlin,Dong, Kunzhe,Zhao, Qianjun,Guan, Weijun,Ma, Yuehui,Jiang, Lin,Zhang, Wenbin,Han, Jianlin.

[5]Classification and phylogeny of sika deer (Cervus nippon) subspecies based on the mitochondrial control region DNA sequence using an extended sample set. Ba, Hengxing,Yang, Fuhe,Xing, Xiumei,Li, Chunyi,Ba, Hengxing,Yang, Fuhe,Xing, Xiumei,Li, Chunyi. 2015

[6]Taxonomic status and genetic diversity of cultured largemouth bass Micropterus salmoides in China. Bai, Junjie,Quan, Yingchun,Liang, Suxian,Lutz-Carrillo, Dijar J.,Liang, Suxian.

[7]Genetic structure in species with shallow evolutionary lineages: A case study of the rare flatfish Verasper variegatus. Sekino, Masashi,Saitoh, Kenji,Shimizu, Daisuke,Wada, Toshihiro,Kamiyama, Kyoichi,Gambe, Somei,Chen, Siqing,Aritaki, Masato.

[8]New genetic perspectives of the ambiguous pomfret as revealed by CR sequences. Li, Yuan,Lin, Longshan,Zhang, Yan,Gao, Tianxiang,Liu, Liqin. 2017

[9]Isolation and characterization of polymorphic microsatellite markers from Coilia ectenes. Rong, X. J.,Wang, Q. Y.,Rong, X. J.,Xu, Y. J.,Wang, Q. Y.,Liao, M. J.,Liu, X. Z.,Pan, C. Y.,Zhang, Z.,Wang, Y. G.. 2013

[10]PCR-RFLP analysis of cytochrome b gene does not support Coilia ectenes taihuensis being a subspecies of Coilia ectenes. Cheng, QQ,Lu, DR.

[11]Genetic variation of Coilia ectenes (Clupeiformes: Engraulidae) revealed by the complete cytochrome b sequences of mitochondrial DNA. Ma, Chunyan,Cheng, Qiqun,Zhang, Qingyi,Zhuang, Ping,Ma, Chunyan,Zhao, Yunlong,Zhang, Qingyi.

[12]Demographic History and Population Structure of Blackfin Flounder (Glyptocephalus stelleri) in Japan Revealed by Mitochondrial Control Region Sequences. Xiao, Yongshuang,Gao, Tianxiang,Zhang, Yan,Yanagimoto, Takashi. 2010

[13]Phylogeography and population structure of the red stingray, Dasyatis akajei inferred by mitochondrial control region. Li, Ning,Chen, Xiao,Song, Na,Gao, Tianxiang,Sun, Dianrong,Lin, Qin. 2015

[14]Pronounced population genetic differentiation in the rock bream Oplegnathus fasciatus inferred from mitochondrial DNA sequences. Xiao, Yongshuang,Li, Jun,Ma, Daoyuan,Wang, Yanfeng,Xiao, ZhiZhong,Xu, Shihong,Ren, Guijing.

[15]Genetic diversity and population structure of Schizopygopsis younghusbandi Regan in the Yarlung Tsangpo River inferred from mitochondrial DNA sequence analysis. Guo, Shan-Shan,Zhang, Gui-Rong,Guo, Xiang-Zhao,Wei, Kai-Jian,Yang, Rui-Bin,Guo, Shan-Shan,Zhang, Gui-Rong,Guo, Xiang-Zhao,Wei, Kai-Jian,Yang, Rui-Bin,Wei, Qi-Wei.

[16]Analysis of microsatellite DNA polymorphisms in five China native cattle breeds and application to population genetics studies. Jin, HG,Zhao, YM,Zhou, GL. 2005

[17]Genetic variation in wild and cultured populations of the pearl oyster Pinctada fucata from southern China. Yu, Da Hui,Chu, Ka Hou. 2006

[18]Multilocus sequence typing of Enterocytozoon bieneusi in nonhuman primates in China. Karim, Md Robiul,Wang, Rongjun,Zhang, Longxian,Dong, Haiju,Qi, Meng,Jian, Fuchun,Zhang, Sumei,Ning, Changshen,He, Xiaoyi,Li, Jian,Rume, Farzana Islam,Sun, Mingfei,Yang, Guangyou,Zoug, Fengcai,Xiao, Lihua.

[19]Genetic differentiation in seven geographic populations of the fleshy shrimp Penaeus (Fenneropenaeus) chinensis based on microsatellite DNA. Meng, Xian Hong,Wang, Qing Yin,Liu, Ping,Kong, Jie,Meng, Xian Hong,Jang, In Kwon.

[20]Low genetic differentiation among widely separated populations of the pearl oyster Pinctada fucata as revealed by AFLP. Yu, DH,Chu, KH.

作者其他论文 更多>>

微信小程序