Development of mapped simple sequence repeat markers from common bean (Phaseolus vulgaris L.) based on genome sequences of a Chinese landrace and diversity evaluation

文献类型： 外文期刊

第一作者： Chen, Mingli

作者： Chen, Mingli;Wu, Jing;Wang, Lanfeng;Jia, Jizeng;Wang, Shumin;Zhang, Xiaoyan;Blair, Matthew W.

作者机构：

关键词： Phaseolus vulgaris L.;SSR markers;Genetic mapping;Genome sequence

期刊名称：MOLECULAR BREEDING （ 影响因子：2.589； 五年影响因子：2.75 ）

ISSN：

年卷期：

页码：

收录情况： SCI

摘要： Microsatellite or single sequence repeat (SSR) markers have been commonly used in genetic research in many crop species, including common bean (Phaseolus vulgaris L.). A limited number of existing SSR markers have been designed from high-throughput sequencing of the genome, warranting the exploitation of new SSR markers from genomic regions. In this paper, we sequenced total DNA from the genotype Hong Yundou with a 454-FLX pyrosequencer and found numerous SSR loci. Based on these, a large number of SSR markers were developed and 90 genomic-SSR markers with clear bands were tested for mapping and diversity detection. The new SSR markers proved to be highly polymorphic for molecular polymorphism, with an average polymorphism information content value of 0.44 in 131 Chinese genotypes and breeding lines, effective for distinguishing Andean and Mesoamerican genotypes. In addition, we integrated 85 primers of the 90 polymorphism markers into the bean map using an F2 segregating population derived from Hong Yundou crossed with Jingdou. The distribution of SSR markers among 11 chromosomes was not random and tended to cluster on the linkage map, with 14 new markers mapped on chromosome Pv01, whereas only four loci were located on chromosome Pv04. Overall, these new markers have potential for genetic mapping, genetic diversity studies and map-based cloning in common bean.

分类号： Q94

  • 相关文献

[1]Genome resources for climate-resilient cowpea, an essential crop for food security. Munoz-Amatriain, Maria,Wanamaker, Steve I.,Ehlers, Jeffrey D.,Guo, Yi-Ning,Lucas, Mitchell R.,Ma, Yaqin,Close, Timothy J.,Mirebrahim, Hamid,Alhakami, Hind,Alpert, Matthew,Bozdag, Serdar,Lonardi, Stefano,Xu, Pei,Luo, MingCheng,Ma, Yaqin,Wu, Jiajie,You, Frank,Atokple, Ibrahim,Batieno, Benoit J.,Drabo, Issa,Boukar, Ousmane,Bozdag, Serdar,Cisse, Ndiaga,Ehlers, Jeffrey D.,Farmer, Andrew,Fatokun, Christian,Gu, Yong Q.,Huynh, Bao-Lam,Jackson, Scott A.,Lawley, Cynthia T.,Timko, Michael P.,You, Frank,Barkley, Noelle A..

[2]Genome-Wide Discovery of Microsatellite Markers from Diploid Progenitor Species, Arachis duranensis and A. ipaensis, and Their Application in Cultivated Peanut (A. hypogaea). Zhao, Chuanzhi,Qiu, Jingjing,Wang, Jiangshan,Ren, Xuezhen,Xia, Han,Wan, Shubo,Wang, Xingjun,Zhao, Chuanzhi,Qiu, Jingjing,Wang, Jiangshan,Ren, Xuezhen,Xia, Han,Wan, Shubo,Wang, Xingjun,Qiu, Jingjing,Ma, Changle,Wang, Xingjun,Agarwal, Gaurav,Guo, Baozhu,Agarwal, Gaurav,Varshney, Rajeev K.,Pandey, Manish K.,Bertioli, David J.. 2017

[3]Increased novel single nucleotide polymorphisms in weedy rice populations associated with the change of farming styles: Implications in adaptive mutation and evolution. Song, Dong-Yuan,Wang, Zhe,Song, Zhuo-Jun,Zhou, Cheng-Chuan,Xu, Peng-Hao,Yang, Ji,Lu, Bao-Rong,Yang, Jie. 2017

[4]Complete genome sequence of Ostreid herpesvirus-1 associated with mortalities of Scapharca broughtonii broodstocks. Xia, Junyang,Xia, Junyang,Bai, Changming,Wang, Chongming,Song, Xiaoling,Huang, Jie,Bai, Changming,Wang, Chongming,Song, Xiaoling,Huang, Jie. 2015

[5]The complete chloroplast genome of Lilium taliense, an endangered species endemic to China. Zhang, Qian,Zhang, Mingfang,Chen, Xuqing,Yang, Fengping,Xue, Jing,Du, Yunpeng,Zhang, Xiuhai,Bi, Yu.

[6]Fine genetic mapping localizes cucumber scab resistance gene Ccu into an R gene cluster. Kang, Houxiang,Yang, Yuhong,Zhang, Zhonghua,Zhang, Shengping,Mao, Zhenchuan,Cheng, Guohua,Gu, Xingfang,Huang, Sanwen,Xie, Bingyan,Weng, Yiqun,Kang, Houxiang,Yang, Yuhong,Zhang, Zhonghua,Zhang, Shengping,Mao, Zhenchuan,Cheng, Guohua,Gu, Xingfang,Huang, Sanwen,Xie, Bingyan.

[7]Complete genome sequence of Bacillus amyloliquefaciens L-S60, a plant growth-promoting and antifungal bacterium. Qin, Yuxuan,Han, Yuzhu,Zhang, Bao,Li, Pinglan,Yu, Yaqiong,Shang, Qingmao.

[8]A Novel Recombined Potato virus Y Isolate in China. Han, Shuxin,Gao, Yanling,Zhang, Wei,Zhang, Junhua,Gao, Yanling,Fan, Guoquan,Zhang, Wei,Qiu, Cailing,Zhang, Shu,Bai, Yanju,Spetz, Carl. 2017

[9]IDENTIFICATION OF GENOME RECOMBINATION AMONG APPLE STEM PITTING VIRUS ISOLATES. Li, Z.,Liu, P.,Sun, L.,Wu, Y.,Li, Z.,Liu, P.,Sun, L.,Wu, Y.,Li, Z.,Kondo, H.,Andika, I. B..

[10]Draft genome sequence of Pseudomonas oleovorans strain MGY01 isolated from deep sea water. Wang, Runping,Zeng, Runying,Wang, Runping,Ren, Chong,Huang, Nan,Liu, Yang,Zeng, Runying.

[11]Draft genome sequence of algal polysaccharides degradation bacterium, Flammeovirga sp OC4. Liu, Yang,Yi, Zhiwei,Zeng, Runying,Zeng, Runying,Cai, Yaping.

[12]The complete genome sequence of Citrus vein enation virus from China. Huang Ai-jun,Song Zhen,Cao Meng-ji,Chen Hong-ming,Li Zhong-an,Zhou Chang-yong,Huang Ai-jun. 2015

[13]Genome-Wide Investigation of WRKY Transcription Factors Involved in Terminal Drought Stress Response in Common Bean. Wu, Jing,Wang, Lanfen,Wang, Shumin,Chen, Jibao. 2016

[14]The genome of Paenibacillus sabinae T27 provides insight into evolution, organization and functional elucidation of nif and nif-like genes. Li, Xinxin,Deng, Zhiping,Liu, Zhanzhi,Wang, Tianshu,Xie, Jianbo,Chen, Sanfeng,Li, Xinxin,Chen, Sanfeng,Yan, Yongliang,Lin, Min,Cheng, Qi. 2014

[15]Bolbase: a comprehensive genomics database for Brassica oleracea. Yu, Jingyin,Zhao, Meixia,Tong, Chaobo,Huang, Shunmou,Tehrim, Sadia,Hua, Wei,Liu, Shengyi,Wang, Xiaowu,Liu, Yumei,Zhao, Meixia. 2013

[16]Complete genome sequence of Pseudomonas azotoformans S4, a potential biocontrol bacterium. Fang, Yang,Wu, Lijuan,Chen, Guoqing,Feng, Guozhong,Fang, Yang.

[17]Complete genome sequence of Streptomyces griseochromogenes ATCC 14511(T), a producer of nucleoside compounds and diverse secondary metabolites. Wu Lijuan,Chen, Guoqing,Feng, Guozhong.

[18]Complete genome sequence of an aromatic compound degrader Arthrobacter sp YC-RL1. Ren, Lei,Jia, Yang,Ruth, Nahurira,Zhao, Baisuo,Yan, Yanchun.

[19]Isolation and sequence analysis of a canine distemper virus from a raccoon dog in Jilin Province, China. Cheng, Yuening,Wang, Jianke,Zhang, Miao,Zhao, Jianjun,Shao, Xiqun,Zhao, Hang,Lin, Peng,Wu, Hua,Ma, Zengjun.

[20]Complete nucleotide sequences of two isolates of Cherry virus A from sweet cherry in China. Li Shi-fang,Lu Mei-guang. 2016

作者其他论文 更多>>

微信小程序