Transcriptome analysis of eyestalk and hemocytes in the ridgetail white prawn Exopalaemon carinicauda: assembly, Annotation and Marker Discovery
文献类型: 外文期刊
第一作者: Li, Jitao
作者: Li, Jitao;Li, Jian;Chen, Ping;Liu, Ping;He, Yuying
作者机构:
关键词: Transcriptome;Exopalaemon carinicauda;454 pyrosequencing;SNPs;SSRs
期刊名称:MOLECULAR BIOLOGY REPORTS ( 影响因子:2.316; 五年影响因子:2.357 )
ISSN:
年卷期:
页码:
收录情况: SCI
摘要: The ridgetail white prawn Exopalaemon carinicauda is one of major economic mariculture species in eastern China. The deficiency of genomic and transcriptomic data is becoming the bottleneck of further researches on its good traits. In the present study, 454 pyrosequencing was undertaken to investigate the transcriptome profiles of E. carinicauda. A collection of 1,028,710 sequence reads (459.59 Mb) obtained from cDNA prepared from eyestalk and hemocytes was assembled into 162,056 expressed sequence tags (ESTs). Of these, 29.88 % of 48,428 contigs and 70.12 % of 113,628 singlets possessed high similarities to sequences in the GenBank non-redundant database, with most significant (E value <1e(-10)) unigenes matches occurring with crustacean and insect sequences. KEGG analysis of unigenes identified putative members of biological pathways related to growth and immunity. In addition, we obtained a total of putative 125,112 SNPs and 13,467 microsatellites. These results will contribute to the understanding of the genome makeup and provide useful information for future functional genomic research in E. carinicauda.
分类号: Q7
- 相关文献
作者其他论文 更多>>
-
Physiological Adaptation of Fenneropenaeus chinensis in Response to Saline-Alkaline Stress Revealed by a Combined Proteomics and Metabolomics Method
作者:Gao, Tian;Sun, Huarui;Liu, Yang;Gao, Tian;Wang, Qiong;Sun, Huarui;Li, Jitao;He, Yuying;Wang, Qiong;Li, Jitao;He, Yuying
关键词:Fenneropenaeus chinensis; proteomics; metabolomics; carbonate alkalinity stress; high pH stress
-
Zearalenone Decreases Food Intake by Disrupting the Gut-Liver-Hypothalamus Axis Signaling via Bile Acids
作者:Yuan, Peiqiang;Ma, Rongman;Huang, Jiancai;Wen, Hongmei;Huang, Lingjie;Li, Hua;Feng, Bin;Zhang, Xiaoling;Lin, Yan;Xu, Shengyu;Li, Jian;Zhuo, Yong;Hua, Lun;Che, Lianqiang;Wu, De;Fang, Zhengfeng;Yuan, Peiqiang;Hu, Liang;Li, Ran;Huang, Lingjie;Chen, Hong;Liu, Yuntao;Fang, Zhengfeng;Wang, Peng;Lin, Sen
关键词:zearalenone; bile acid metabolism; toxicity; farnesoid X receptor; food intake
-
Relay intercropping boosts soybean recovery growth and delays nodule senescence to achieve yield advantages
作者:Chen, Ping;Yang, Huan;Du, Qing;Fu, Zhidan;Luo, Kai;Li, Yilin;Lin, Ping;Peng, Xihong;Pu, Tian;Wu, Yushan;Wang, Xiaochun;Yong, Taiwen;Yang, Wenyu;Chen, Ping;Zheng, Benchuan;Yong, Taiwen
关键词:Soybean; Root nodules; Senescence; Intercropping; Antioxidants; Yield advantage
-
Genetic structural analysis of different breeds and geographical groups of Fenneropenaeus chinensis reveals population diversity
作者:Wang, Qiong;Jiang, Yuhan;Li, Jian;Li, Jitao;He, Yuying;Wang, Qiong;Li, Jian;Li, Jitao;He, Yuying
关键词:Genetic structure; Fenneropenaeus chinensis; Population; Commercial breed; Selection signature
-
Genome-wide identification of ATG genes and their expression profiles under biotic and abiotic stresses in Fenneropenaeus chinensis
作者:Guan, Chenhui;Li, Yalun;Li, Zhaoxia;Guan, Chenhui;Li, Yalun;Wang, Qiong;Wang, Jiajia;Tian, Caijuan;He, Yuying;Wang, Qiong;Wang, Jiajia;He, Yuying;Tian, Caijuan
关键词:Fenneropenaeus chinensis; Autophagy; WSSV; Low-salt stress
-
Severe nitrogen leaching and marked decline of nitrogen cycle-related genes during the cultivation of apple orchard on barren mountain
作者:Shen, Yuwen;Lin, Haitao;Liu, Ping;Song, Xiaozong;Chen, Haining;Ma, Yanan;Li, Mingli;Gao, Wensheng;Song, Lingling;Shen, Yuwen;Shen, Yuwen
关键词:New orchard; N fertilization management; Nitrogen loss; Nitrogen functional genes
-
Chromosome-level genome assembly of ridgetail white shrimp Exopalaemon carinicauda
作者:Wang, Jiajia;Lv, Jianjian;Ge, Qianqian;Wang, Qiong;He, Yuying;Li, Jian;Li, Jitao;Wang, Jiajia;Lv, Jianjian;Ge, Qianqian;Wang, Qiong;He, Yuying;Li, Jian;Li, Jitao;Shi, Miao
关键词: