Phylogeography and origin of Chinese domestic chicken

文献类型： 外文期刊

第一作者： Wu, Y. P.

作者： Wu, Y. P.;Huo, J. H.;Xie, J. F.;Liu, L. X.;Wei, Q. P.;Xie, M. G.;Kang, Z. F.;Ji, H. Y.;Ma, Y. H.

作者机构：

关键词： Chicken;mitochondrial DNA;origin;phylogeography

期刊名称：MITOCHONDRIAL DNA （ 影响因子：0.925； 五年影响因子：0.994 ）

ISSN：

年卷期：

页码：

收录情况： SCI

摘要： The loss of local chicken breeds as result of replacement with cosmopolitan breeds indicates the need for conservation measures to protect the future of local genetic stocks. The aim of this study is to describe the patterns of polymorphism of the hypervariable control region of mitochondrial DNA (HVR1) in domestic chicken in China's Jiangxi province to investigate genetic diversity, genetic structure and phylo-dynamics. To this end, we sequenced the mtDNA HVR1 in 231 chickens including 22 individuals which belonged to previously published sequences. A neighbor-joining tree revealed that these samples clustered into five lineages (Lineages A, B, C, E and G). The highest haplotype diversity and nucleotide diversity were both found in Anyi tile-liked gray breed. We estimated that the most recent common ancestor of the local chicken existed approximately 16 million years ago. The mismatch distribution analysis showed two major peaks at positions 4 and 9, while the neutrality test (Tajima's D = -2.19, p<0.05) and Fu's F-statistics (-8.59, p<0.05) revealed a significant departure from the neutrality assumption. These results support the idea that domestication of chickens facilitated population increases. Results of a global AMOVA indicated that there was no obvious geographic structure among the local chicken breeds analyzed in this study. The data obtained in this study will assist future conservation management of local breeds and also reveals intriguing implications for the history of human population movements and commerce.

分类号： Q81

  • 相关文献

[1]Genetic structure in species with shallow evolutionary lineages: A case study of the rare flatfish Verasper variegatus. Sekino, Masashi,Saitoh, Kenji,Shimizu, Daisuke,Wada, Toshihiro,Kamiyama, Kyoichi,Gambe, Somei,Chen, Siqing,Aritaki, Masato.

[2]Origin and genetic diversity of Chinese domestic ducks. Li, Hui-Fang,Zhu, Wen-Qi,Song, Wei-Tao,Shu, Jing-Ting,Han, Wei,Chen, Kuan-Wei.

[3]Population phylogenomic analysis and origin of mitochondrial DNA in Chinese domestic pig. Huo, J. H.,Wei, Q. P.,Wan, M. C.,Liu, L. X.,Zhou, Q. Y.,Yang, Q.,Wu, Y. P.,Hu, L. F.,Xiong, L. G..

[4]Identification and Characterization of a Polymorphic Mono-Nucleotide Microsatellite within 16S rRNA Gene in Chicken Mitochondrial Genome. Zhao, Shengguo,Han, Jianlin,Zhao, Shengguo,Zhao, Shengguo,Hanotte, Olivier,Han, Jianlin,Hanotte, Olivier. 2009

[5]Genetic phylogeography and maternal lineages of 18 Chinese black goat breeds. Zhong, Tao,Wang, Lin Jie,Li, Li,Niu, Li Li,Wang, Jie,Jin, Peng Fei,Zhao, Wei,Zhang, Hong Ping,Zhao, Qian Jun,Ma, Yue Hui. 2013

[6]Population differentiation and phylogeographic pattern of a relict species, Conandron ramondioides (Gesneriaceae), revealed from sequence polymorphism and haplotypes of the CYCLOIDEA gene. Wang, Yin-Zheng,Xiao, Li-Hong,Li, Zhi,Wang, Rui. 2012

[7]The complete mitochondrial genome sequence of Schizothorax macropogon (Cypriniformes: Cyprinidae). Zhu, Yuxia,Chen, Ying,Cheng, Qiqun,Qiao, Huiying,Chen, Wenming,Zhu, Yuxia,Chen, Ying,Qiao, Huiying,Chen, Wenming.

[8]Sequence and organization of the complete mitochondrial genome of Schizopygopsis thermalis (Cypriniformes:Cyprinidae). Qiao, Huiying,Cheng, Qiqun,Chen, Ying,Qiao, Huiying,Chen, Ying.

[9]The complete mitochondrial genome sequence of Schizothorax wangchiachii (Cypriniformes: Cyprinidae). Chen, Ying,Cheng, Qiqun,Qiao, Huiying,Zhu, Yuxia,Chen, Wenming,Ren, Guijing,Chen, Ying,Qiao, Huiying,Zhu, Yuxia,Chen, Wenming.

[10]Phylogeography and origin of sheep breeds in Northern China. Ma, YH,Rao, SQ,Lu, SJ,Hou, GY,Guan, WJ,Li, HB,Li, X,Zhao, QJ,Guo, J.

[11]Genotypic and geographical distribution of porcine reproductive and respiratory syndrome viruses in mainland China in 1996-2016. Gao, Jia-Cong,Xiong, Jun-Yao,Chang, Xiao-Bo,Guo, Jin-Chao,Jiang, Cheng-Gang,Tian, Zhi-Jun,Cai, Xue-Hui,An, Tong-Qing,Ye, Chao,Tong, Guang-Zhi,Zhang, Gui-Hong,Zhang, Gui-Hong. 2017

[12]A fine map for maternal lineage analysis by mitochondrial hypervariable region in 12 Chinese goat breeds. Ma, Yue-Hui,Wu, Yan-Ping,Huo, Jun-Hong,Xie, Jin-Fang,Han, Jian-Lin,Rao, Shao-Qi.

[13]Identification of Y Chromosome Genetic Variations in Chinese Indigenous Horse Breeds. Ling, Yinghui,Ma, Yuehui,Guan, Weijun,Cheng, Yuejiao,Wang, Yanping,Han, Jianlin,Jin, Dapeng,Ling, Yinghui,Ma, Yuehui,Guan, Weijun,Cheng, Yuejiao,Wang, Yanping,Han, Jianlin,Jin, Dapeng,Mang, Lai,Mahmut, Halik. 2010

[14]Population genetics of Setaria viridis, a new model system. Huang, Pu,Feldman, Maximilian,Kellogg, Elizabeth A.,Schroder, Stephan,Bahri, Bochra A.,Devos, Katrien M.,Bahri, Bochra A.,Diao, Xianmin,Zhi, Hui,Estep, Matt,Baxter, Ivan.

[15]Genetic variation and phylogeography of Psammosilene tunicoides (Caryophyllaceae), a narrowly distributed and endemic species in south-western China. Zhang, Qing-Ying,Zhao, Yu-Juan,Gong, Xun,Zhang, Qing-Ying.

[16]Genetic structure and phylogeography of Pyrus pashia L. (Rosaceae) in Yunnan Province, China, revealed by chloroplast DNA analyses. Liu, Jing,Sun, Ping,Zheng, Xiaoyan,Hu, Chunyun,Teng, Yuanwen,Zheng, Xiaoyan,Potter, Daniel,Li, Kunming. 2013

[17]The complete mitochondrial genome sequence of Coilia ectenes (Clupeiformes: Engraulidae). Qiao, Huiying,Cheng, Qiqun,Chen, Ying,Chen, Wenming,Zhu, Yuxia,Qiao, Huiying,Chen, Ying,Chen, Wenming,Zhu, Yuxia.

[18]Phylogeography of Rosa soulieana (Rosaceae) in the Hengduan Mountains: refugia and 'melting' pots in the Quaternary climate oscillations. Jian, Hong-Ying,Sun, Hang,Jian, Hong-Ying,Tang, Kai-Xue,Jian, Hong-Ying.

[19]Genetic diversity in Chinese sorghum landraces revealed by chloroplast simple sequence repeats. Li, Ruyu,Zhang, Chunqing,Li, Ruyu,Zhang, Han,Guan, Yanan,Yao, Fengxia,Song, Guoan,Wang, Jiancheng,Zhou, Xincheng.

[20]Chloroplast Simple Sequence Repeat (cp-SSR) Analysis for Determining the Origin of J-hopeiensis. Qi, J. X.,Wu, C. L.,Dong, N. G.,Chen, Y. H.,Hao, Y. B.. 2014

作者其他论文 更多>>

微信小程序