Genetic diversity and population structure of largehead hairtail, Trichiurus japonicus, based on mtDNA control region

文献类型： 外文期刊

第一作者： Xiao, Yongshuang

作者： Xiao, Yongshuang;Song, Na;Gao, Tianxiang;Xiao, Yongshuang;Li, Jun;Xiao, Yongshuang;Ren, Guijing

作者机构：

关键词： Coalescent analyses;genetic diversity;population structure;Trichiurus japonicus

期刊名称：MITOCHONDRIAL DNA （ 影响因子：0.925； 五年影响因子：0.994 ）

ISSN：

年卷期：

页码：

收录情况： SCI

摘要： Largehead hairtail, Trichiurus japonicus, is a valuable commercially exploited demersal species. We gathered mtDNA control region sequences (30 mtDNA CR) of T. japonicus to investigate its genetic diversity and population genetic structure. Fifty-four specimens were collected from the nearshore localities along the coastline of China. A total of 42 polymorphic sites were found, which defined 40 haplotypes. A pattern with high level of haplotype diversity (h = 0.98 +/- 0.01) and very low level of nucleotide diversity (pi = 0.008 +/- 0.005) were detected in the examined range. Comparing pi with other fish species shows that T. japonicus has remarkable low genetic diversity values compared with other Pacific Ocean marine fishes. AMOVA and conventional Fst values revealed no significant genetic structure throughout the examined range, which is inconsistent with the previous findings based on the morphological and ecological studies. Using a variety of phylogenetic methods, coalescent reasoning, and molecular dating interpreted in conjunction with paleoclimateic and physiographic evidence, we infer that the genetic make-up of extant populations of T. japonicus was shaped by Pleistocene environmental impacts on the historical demography of this species. Coalescent analyses (Neutrality tests, Mismatch distribution analysis, Bayesian skyline analyses) showed that the species along the coastline of China has experienced population expansions originated in its most recent history at about 153-216 kyr.

分类号： Q81

  • 相关文献

[1]Association mapping of yield-related traits and SSR markers in wild soybean (Glycine sofa Sieb. and Zucc.). Hu, Zhenbin,Zhang, Dan,Zhang, Guozheng,Kan, Guizhen,Hong, Delin,Yu, Deyue,Hu, Zhenbin,Zhang, Dan. 2014

[2]Analysis of genetic diversity and population structure in a tomato (Solanum lycopersicum L.) germplasm collection based on single nucleotide polymorphism markers. Wang, T.,Wang, T.,Zou, Q. D.,Qi, S. Y.,Wang, X. F.,Wu, Y. Y.,Zhang, Y. M.,Zhang, Z. J.,Li, H. T.,Liu, N.. 2016

[3]Mitochondrial DNA reveals low population differentiation in elongate loach, Leptobotia elongata (Bleeker): implications for conservation. Zhou, Dinggang,Liu, Guangxun,Zhou, Jian. 2012

[4]Genetic Diversity and Structure of Lolium Species Surveyed on Nuclear Simple Sequence Repeat and Cytoplasmic Markers. Cai, Hongwei,Guan, Xuanli,Cai, Hongwei,Guan, Xuanli,Cai, Hongwei,Yuyama, Nana,Cai, Hongwei,Stewart, Alan,Ding, Chenglong,Xu, Nengxiang,Kiyoshi, Takako. 2017

[5]Genetic variation and population structure of the oriental fruit moth Grapholita molesta in Shanxi, a major pome fruits growing region in North China. Yang, Jing,Liu, Zhong-Fang,Fan, Ji-Qiao,Fan, Ren-Jun,Yang, Jing,Liu, Zhong-Fang,Fan, Ji-Qiao,Fan, Ren-Jun,Wu, Yu-Peng,Ma, Rui-Yan. 2016

[6]Genetic diversity and population structure of cultivated bromeliad accessions assessed by SRAP markers. Zhang, Fei,Ge, Yaying,Wang, Weiyong,Shen, Xiaolan,Liu, Xiaojing,Liu, Jianxin,Tian, Danqing,Yu, Xinying. 2012

[7]Genetic diversity and population structure of ginseng in China based on RAPD analysis. Zhao, Yan,Xu, Yong-hua,Zhang, Lian-xue,Wang, Shi-jie,Han, Feng-bo,Li, Ru-sheng,Chen, Xiao-lin,Wang, Shi-jie,Li, Gang. 2016

[8]Genetic diversity and population structure of Lamiophlomis rotata (Lamiaceae), an endemic species of Qinghai-Tibet Plateau. Liu, Jimei,Wang, Li,Geng, Yupeng,Wang, Qingbiao,Luo, Lijun,Zhong, Yang. 2006

[9]Analysis of Genetic Diversity and Population Structure of Maize Landraces from the South Maize Region of China. Liu Zhi-zhai,Guo Rong-hua,Wang Rong-huan,Shi Yun-su,Song Yan-chun,Wang Tian-yu,Li Yu,Liu Zhi-zhai,Cai Yi-lin,Guo Rong-hua,Cao Mo-ju,Zhao Jiu-ran,Wang Feng-ge,Wang Rong-huan. 2010

[10]Development of Cymbidium ensifolium genic-SSR markers and their utility in genetic diversity and population structure analysis in cymbidiums. Li, Xiaobai,Jin, Liang,Jin, Feng,Jackson, Aaron,Huang, Cheng,Li, Kehu,Shu, Xiaoli. 2014

[11]Development and characterization of microsatellite markers of the eastern keelback mullet (Liza affinis). Liu, L.,Song, N.,Gao, T. X.,Han, Z. Q.,Li, C. H.,Sun, D. R.. 2016

[12]Development of novel InDel markers and genetic diversity in Chenopodium quinoa through whole-genome re-sequencing. Zhang, Tifu,Lv, Yuanda,Zhou, Ling,Lu, Haiyan,Liang, Shuaiqiang,Bao, Huabin,Zhao, Han,Gu, Minfeng,Liu, Yuhe. 2017

[13]Evaluation of the genetic diversity and population structure of five indigenous and one introduced Chinese goose breeds using microsatellite markers. Li, Jinjun,Yuan, Qingyuan,Shen, Junda,Tao, Zhengrong,Li, Guoqing,Tian, Yong,Wang, Deqian,Chen, Li,Lui, Lizhi. 2012

[14]Genetic diversity and structure of the core collection for maize inbred lines in China. Yu, Y.,Wang, R.,Shi, Y.,Song, Y.,Wang, T.,Li, Y.. 2007

[15]Genetic diversity and population structure in Elephantopus scaber (Asteraceae) from South China as revealed by ISSR markers. Wang, L.,Liu, J.,Zhang, W.,Wang, Q.,Zhao, X.,Liu, N.,Zhong, Y.. 2006

[16]Genetic Diversity, Population Structure, and Linkage Disequilibrium of an Association-Mapping Panel Revealed by Genome-Wide SNP Markers in Sesame. Cui, Chengqi,Mei, Hongxian,Liu, Yanyang,Zhang, Haiyang,Zheng, Yongzhan,Mei, Hongxian,Liu, Yanyang,Zhang, Haiyang,Zheng, Yongzhan,Mei, Hongxian,Liu, Yanyang,Zhang, Haiyang,Zheng, Yongzhan. 2017

[17]A microsatellite diversity analysis and the development of core-set germplasm in a large hulless barley (Hordeum vulgare L.) collection. Xu, Qijun,Zeng, Xingquan,Lin, Bin,Yuan, Hongjun,Wang, Yulin,Zhasang,Tashi, Nyima,Xu, Qijun,Zeng, Xingquan,Lin, Bin,Yuan, Hongjun,Wang, Yulin,Zhasang,Tashi, Nyima,Li, Zeqing. 2017

[18]Molecular diversity and genetic structure of 380 sweetpotato accessions as revealed by SSR markers. Yang Xin-sun,Liu Qing-chang,Yang Xin-sun,Su Wen-jin,Wang Lian-jun,Lei Jian,Chai Sha-sha. 2015

[19]Genetic diversity of garlic (Allium sativum L.) germplasm from China by fluorescent-based AFLP, SSR and InDel markers. Wang, Haiping,Li, Xixiang,Liu, Xiuhui,Oiu, Yang,Song, Jiangping,Zhang, Xiaohui.

[20]High polymorphism and moderate differentiation of chub mackerel, Scomber japonicus (Perciformes: Scombridae), along the coast of China revealed by fifteen novel microsatellite markers. Cheng, Qiqun,Zhu, Yuxia,Chen, Xiaoyong.

作者其他论文 更多>>

微信小程序