Plastid DNA insertions in plant nuclear genomes: the sites, abundance and ages, and a predicted promoter analysis

文献类型： 外文期刊

第一作者： Chen, Hongyu

作者： Chen, Hongyu;Zhang, Zhenzhu;Gong, Chao;Wang, Aoxue;Yu, Ying;Chen, Xiuling;Li, Jingfu

作者机构：

关键词： Plastid DNA;Genome;Promoter;Plant

期刊名称：FUNCTIONAL & INTEGRATIVE GENOMICS （ 影响因子：3.41； 五年影响因子：3.616 ）

ISSN：

年卷期：

页码：

收录情况： SCI

摘要： The transfer of plastid DNA sequences into plant nuclear genomes plays an important role in the genomic evolution of plants. The abundance of nuclear-localized plastid DNA (nupDNA) correlates positively with nuclear genome size, but the genetic content of nupDNA remains unknown. In this mini review, we analyzed the number of nuclear-localized plastid gene fragments in known plant genomic data. Our analysis suggests that nupDNAs are abundant in plant nuclear genomes and can include multiple complete copies of protein-coding plastid genes. Mutated nuclear copies of plastid genes contained synonymous and nonsynonymous substitutions. We estimated the age of the nupDNAs based on the time when each integration occurred, which was calculated by comparing the nucleotide substitution rates of the nupDNAs and their respective plastid genes. These data suggest that there are two distinct age distribution patterns for nupDNAs in plants, and Oryza sativa and Zea mays were found to contain a very high proportion of young nupDNAs. Expressed sequence tags and predicted promoters of nupDNAs were identified, revealing that certain nuclear-localized plastid genes may be functional and that some have undergone positive natural selection pressure.

分类号： Q78

  • 相关文献

[1]The ecdysteroid UDP-glucosyltransferase gene promoter from Autographa californica multicapsid nucleopolyhedrovirus. Shen, XJ,Yi, YZ,Tang, SM,Zhang, ZF,Li, YR,He, JL.

[2]A novel simple extracellular leucine-rich repeat (eLRR) domain protein from rice (OsLRR1) enters the endosomal pathway and interacts with the hypersensitive-induced reaction protein 1 (OsHIR1). Zhou, Liang,Cheung, Ming-Yan,Zhang, Shi-Hong,Sun, Samuel Sai-Ming,Lam, Hon-Ming,Zhou, Liang,Cheung, Ming-Yan,Zhang, Shi-Hong,Sun, Samuel Sai-Ming,Lam, Hon-Ming,Zhang, Qi,Lei, Cai-Lin,Zhang, Shi-Hong.

[3]A conserved unusual posttranscriptional processing mediated by short, direct repeated (SDR) sequences in plants. Tang, Wei,Liu, Yongsheng,Niu, Xiangli,Luo, Di,Gao, Shaopei,Chang, Lijuan,Zhou, Yuke,Luo, Xiaoli,Li, Yuxiang,Hou, Pei,Tang, Wei,Liu, Yongsheng,Niu, Xiangli,Luo, Di,Gao, Shaopei,Chang, Lijuan,Zhou, Yuke,Luo, Xiaoli,Li, Yuxiang,Hou, Pei,Tang, Wei,Liu, Yongsheng,Ren, Guangjun,Lu, Bao-Rong. 2010

[4]Interactions between nanoparticles and plants: phytotoxicity and defense mechanisms. Yang, Jie,Rui, Yukui,Cao, Weidong. 2017

[5]Extended biotic ligand model for predicting combined Cu-Zn toxicity to wheat (Triticum aestivum L.): Incorporating the effects of concentration ratio, major cations and pH. Wang, Xuedong,Ji, Dongxue,Chen, Xiaolin,Li, Xiaoxiu,Ma, Yibing,Ma, Yibing,Yang, Junxing.

[6]Cytoskeletal inhibitors suppress the stomatal opening of Vicia faba L. induced by fusicoccin and IAA. Huang, RF,Wang, XC,Lou, CH.

[7]Plant biotechnology in China. Huang, JK,Rozelle, S,Pray, C,Wang, QF.

[8]Bacillus ciccensis sp nov., isolated from maize (Zea mays L.) seeds. Liu, Yang,Li, Nannan,Zhang, Xin,Cao, Yanhua,Ge, Yuanyuan,Cheng, Chi,Liu, Yang,Zhao, Jiuran,Li, Nannan,Xiao, Ming,Eom, Mi Kyung,Kim, Song-Gun,Schumann, Peter.

[9]Cold-induced modulation and functional analyses of the DRE-binding transcription factor gene, GmDREB3, in soybean (Glycine max L.). Chen, Ming,Xu, Zhaoshi,Xia, Lanqin,Li, Liancheng,Dong, Jianhui,Wang, Qiaoyan,Ma, Youzhi,Cheng, Xianguo.

[10]RNAi-mediated plant protection against aphids. Yu, Xiu-Dao,Sun, Yong-Wei,Ma, You-Zhi,Xia, Lan-Qin,Yu, Xiu-Dao,Liu, Zong-Cai,Huang, Si-Liang,Chen, Zhi-Qin,Duan, Peng-Fei.

[11]Typical Azole Biocides in Biosolid-Amended Soils and Plants Following Biosolid Applications. Chen, Zhi-Feng,Ying, Guang-Guo,Lai, Hua-Jie,Chen, Feng,Pan, Chang-Gui,Ma, Yi-Bing.

[12]Genetic dissection of silicon uptake ability in rice (Oryza sativa L.). Wu, Q. -S.,Wan, X. -Y.,Su, N.,Cheng, Z. -J.,Wang, J. -K.,Lei, C. -L.,Zhang, X.,Jiang, L.,Ma, J. -F.,Wan, J. -M..

[13]Isolation and characterization of a cDNA encoding a papain-like cysteine protease from alfalfa. Yan, Longfeng,Han, Jianguo,Sun, Yan,Yan, Longfeng,Yang, Qingchuan,Kang, Junmei,Liu, Zhipeng,Wu, Mingsheng.

[14]Composition of the volatiles from intact and mechanically pierced tea aphid-tea shoot complexes and their attraction to natural enemies of the tea aphid. Han, BY,Chen, ZM.

[15]Rapid one-step construction of hairpin RNA. Yan, Pu,Shen, Wentao,Gao, Xinzheng,Zhou, Peng,Duan, Jun. 2009

[16]DTH8 suppresses flowering in rice, influencing plant height and yield potential simultaneously. Wei, Xiangjin,Xu, Junfeng,Guo, Hongnian,Jiang, Ling,Chen, Saihua,Yu, Chuanyuan,Zhou, Zhenling,Wan, Jianmin,Wei, Xiangjin,Hu, Peisong,Zhai, Huqu,Wan, Jianmin.

[17]A Rapid and Economical Method for Low Molecular Weight RNA Isolation from a Wide Variety of Plant Species. An, Zewei,Li, Yachao,Xie, Lili,Zhai, Qilin,An, Zewei,Huang, Huasun,An, Zewei,Huang, Huasun.

[18]Gene duplication and transfer events in plant mitochondria genome. Xiong, Ai-Sheng,Peng, Ri-He,Zhuang, Jing,Gao, Feng,Zhu, Bo,Fu, Xiao-Yan,Xue, Yong,Jin, Xiao-Fen,Tian, Yong-Sheng,Zhao, Wei,Yao, Quan-Hong. 2008

[19]Determination of perfluoroalkyl acid isomers in biosolids, biosolids-amended soils and plants using ultra-high performance liquid chromatography tandem mass spectrometry. Zhang, Hongna,Wen, Bei,Wu, Yali,Luo, Lei,Zhang, Shuzhen,Wen, Wen,Ma, Yibing,Hu, Xiaoyu. 2018

[20]Isolation and characterization of glyphosate-regulated genes in soybean seedlings. Yu, Wancong,Zhang, Rui,Li, Runzhi,Guo, Sandui.

作者其他论文 更多>>

微信小程序