Genetic fine mapping and candidate gene analysis of the Gossypium hirsutum Ligon lintless-1 (Li1) mutant on chromosome 22(D)

文献类型： 外文期刊

第一作者： Yurong Jiang;;Mingquan Ding

作者： Yurong Jiang;Mingquan Ding;Yuefen Cao;Fen Yang;Hua Zhang;Shae He;Huaqin Dai;Huanfeng Hao;Junkang Rong

作者机构：

关键词： Cotton;Fiber;Ligon lintless-1;Genetic mapping;Single-strand conformation polymorphism (SSCP) marker

期刊名称：MOLECULAR GENETICS AND GENOMICS （ 影响因子：3.291； 五年影响因子：3.257 ）

ISSN：

年卷期：

页码：

收录情况： SCI

摘要： Ligon lintless-1 (Li1) is a Gossypium hirsutum mutant that is controlled by a dominant gene that arrests the development of cotton fiber after anthesis. Two F-2 mapping populations were developed from mutant (Li1 x H7124) F-1 plants in 2012 and 2013; each was composed of 142 and 1024 plants, respectively. Using these populations, Li1 was mapped to a 0.3-cM region in which nine single-strand conformation polymorphism markers co-segregated with the Li1 locus. In the published G. raimondii genome, these markers were mapped to a region of about 1.2 Mb (the Li1 region) and were separated by markers that flanked the Li1 locus in the genetic map, dividing the Li1 region into three segments. Thirty-six genes were annotated by the gene prediction software FGENESH (Softberry) in the Li1 region. Twelve genes were candidates of Li1, while the remaining 24 genes were identified as transposable elements, DNA/RNA polymerase superfamily or unknown function genes. Among the 12 candidate genes, those encoding ribosomal protein s10, actin protein, ATP synthase, and beta-tubulin 5 were the most-promising candidates of the Li1 mutant because the function of these genes is closely related to fiber development. High-throughput RNA sequencing and quantitative PCR revealed that these candidate genes had obvious differential gene expression between mutant and wild-type plants at the fiber elongation stage, strengthening the inference that they could be the most likely candidate gene of the Li1 mutant phenotype.

分类号： Q7

  • 相关文献

[1]Transcriptome analysis reveals critical genes and key pathways for early cotton fiber elongation in Ligon lintless-1 mutant. Jing Sun,Liangyu Yao,Kang Liu,Youlu Yuan.

[2]Comparative proteomic analysis reveals the mechanisms governing cotton fiber differentiation and initiation. Kang Liu,Meiling Han,Chaojun Zhang,Liangyu Yao,Jing Sun,Tianzhen Zhang.

[3]QTL mapping for fiber quality traits across multiple generations and environments in upland cotton. Fu-Ding Sun,Jian-Hong Zhang,Shu-Fang Wang,Wan-Kui Gong,Yu-Zhen Shi,Ai-Ying Liu,Jun-Wen Li,Ju-Wu Gong,Hai-Hong Shang,You-Lu Yuan.

[4]Genome-Wide Analysis of the Sus Gene Family in Cotton. Changsong Zou,Cairui Lu,Haihong Shang,Xinrui Jing,Hailiang Cheng,Youping Zhang,Guoli Song. 2013

[5]Transcriptome analysis reveals long noncoding RNAs involved in fiber development in cotton (Gossypium arboreum). Changsong Zou,Qiaolian Wang,Cairui Lu,Wencui Yang,Youping Zhang,Hailiang Cheng,Xiaoxu Feng,Mtawa Andrew Prosper,Guoli Song. 2016

[6]Effect of graded levels of fiber from alfalfa meal on intestinal nutrient and energy flow, and hindgut fermentation in growing pigs. Chen, L.,Zhang, H. F.,Gao, L. X.,Zhao, F.,Lu, Q. P.,Sa, R. N.. 2013

[7]Expression of Prolactin Receptor mRNA after Melatonin Manipulated in Cashmere Goats Skin during Cashmere Growth. Zhang, Wei,Zhu, Xiaoping,Jia, Zhihai,Yue, Chunwang,Kong, Xianghao,Du, Lixin.

[8]Bio-degumming technology of jute bast by Pectobacterium sp DCE-01. Duan, Shengwen,Feng, Xiangyuan,Cheng, Lifeng,Peng, Yuande,Zheng, Ke,Liu, Zhengchu. 2016

[9]Effect of Graded Levels of Fiber from Alfalfa Meal on Nutrient Digestibility and Flow of Fattening Pigs. Chen Liang,Gao Li-xiang,Zhang Hong-fu. 2014

[10]Molecular diversity of rumen bacterial communities from tannin-rich and fiber-rich forage fed domestic Sika deer (Cervus nippon) in China. Li, Zhi Peng,Liu, Han Lu,Li, Guang Yu,Bao, Kun,Wang, Kai Ying,Xu, Chao,Yang, Yi Feng,Yang, Fu He,Wright, Andre-Denis G.. 2013

[11]Transcriptome profiling of early developing cotton fiber by deep-sequencing reveals significantly differential expression of genes in a fuzzless/lintless mutant. Wang, Qin Qin,Liu, Fei,Zeng, Hou Qing,Yang, Zhi Min,Chen, Xu Sheng,Ma, Xiao Jie. 2010

[12]Fabrication of the Monolithic Fiber for the Solid Phase Micro-extraction of Malachite Green. Chen, Jin,Yang, Jing-Hua,Zhang, Yu-Ping,Chen, Jin,Yang, Jing-Hua,Zhou, Xiao-Mao,Bai, Lian-Yang,Bai, Lian-Yang. 2015

[13]Shifts in Rumen Fermentation and Microbiota Are Associated with Dissolved Ruminal Hydrogen Concentrations in Lactating Dairy Cows Fed Different Types of Carbohydrates. Wang, Min,Wang, Rong,Xie, Tian Yu,Tan, Zhi Liang,Wang, Min,Xie, Tian Yu,Gao, Min,Janssen, Peter H.,Sun, Xue Zhao,Beauchemin, Karen A..

[14]Grass carp reovirus-GD108 fiber protein is involved in cell attachment. Tian, Yuanyuan,Jiao, Zhenzhen,Dong, Junjian,Sun, Chengfei,Jiang, Xiaoyan,Ye, Xing,Tian, Yuanyuan,Jiao, Zhenzhen.

[15]Histological and Ultrastructural Observation Reveals Significant Cellular Differences between Agrobacterium Transformed Embryogenic and Non-embryogenic Calli of Cotton. Shang, Hai-Hong,Liu, Chuan-Liang,Zhang, Chao-Jun,Li, Feng-Lian,Hong, Wei-Dong,Li, Fu-Guang.

[16]Identification of the resistance gene to powdery mildew in Chinese wheat landrace Baiyouyantiao. Feng Jing,Fan Jie-ru,Zhou Yi-lin,Xu Xiao-dan,Ma Zhan-hong,Liu Zhi-yong,Li Qiang. 2018

[17]Genetic analysis and QTL mapping of maize yield and associate agronomic traits under semi-arid land condition. Guo, Jiufeng,Zhang, Jinpeng,Wang, Guoying,Wang, Guoying,Guo, Jiufeng,Su, Guoqin. 2008

[18]Inheritance and mapping of male sterility restoration gene in upland japonica restorer lines. Tao, DY,Xu, P,Li, J,Hu, FY,Yang, YQ,Zhou, JW,Tan, XL,Jones, MP. 2004

[19]Genomic distribution and characterization of EST-derived resistance gene analogs (RGAs) in sugarcane. Rossi, M,Araujo, PG,Paulet, F,Garsmeur, O,Dias, VM,Chen, H,Van Sluys, MA,D'Hont, A. 2003

[20]Microsatellite mapping of the powdery mildew resistance gene Pm5e in common wheat (Triticum aestivum L.). Huang, XQ,Wang, LX,Xu, MX,Roder, MS. 2003

作者其他论文 更多>>

微信小程序