Shotgun assembly of the mitochondrial genome from Fenneropenaeus penicillatus with phylogenetic consideration

文献类型： 外文期刊

第一作者： Zhang, Dianchang

作者： Zhang, Dianchang;Gong, Fahui;Liu, Tiantian;Guo, Huayang;Zhang, Nan;Zhu, Kecheng;Jiang, Shigui;Gong, Fahui;Liu, Tiantian

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关键词： Penaeidae;Shrimp;Mitochondrial genome;Phylogenetic relationship;Shotgun assembly

期刊名称：MARINE GENOMICS （ 影响因子：1.71； 五年影响因子：1.969 ）

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收录情况： SCI

摘要： The complete mitochondrial genome is of great importance for better understanding of the genome-level characteristics and phylogenetic relationships among related species. In this study, Fenneropenaeus penicillatus mitochondrial genome sequence was determined by next-generation sequencing. The complete genome DNA was 16,040 bp in length and consisted of a typical set of 13 protein-coding genes, 22 transfer RNA (tRNA) genes, two ribosomal RNA (rRNA) genes and a putative control region (CR). The gene arrangement is identical to the pancrustacean pattern. The overall base composition of its mitochondrial genome is estimated to be 34.1% for A, 34.1% for T, 12.5% for G and 193% for C with a high A +T content (68.2%). The analysis of the average Ka/Ks in the 13 mitochondrial protein-coding genes of penaeid shrimps indicated a strong purifying selection within this group. The phylogenetic analysis based on mitochondrial sequences and 13 concatenated protein-coding genes showed strong statistic support for the following relationship among the five genera ((Penaeus s.s + Fenneropenaeus) + (Litopenaeus + Farfantepenaeus)) + Marsupenaeus. The sequence data of F. penicillatus can provide useful information for the studies on molecular systematics, population structure, stock evaluation and conservation genetics. (c) 2015 Elsevier B.V. All rights reserved.

分类号： Q3

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