Comparative transcriptome analysis revealed the genotype specific cold response mechanism in tobacco

文献类型： 外文期刊

第一作者： Xiang, Shipeng

作者： Xiang, Shipeng;Zhu, Lieshu;Zhu, Xianxin;Xiang, Shipeng;Zhou, Qingming;Zhu, Lieshu;Zhan, Youguo;Zhu, Mingdong;Yin, Hanqi;Zhang, Xianwen;Liu, Zhi

作者机构：

关键词： Cold stress;Transcriptome;Tobacco;Circadian clock

期刊名称：BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS （ 影响因子：3.575； 五年影响因子：3.381 ）

ISSN：

年卷期：

页码：

收录情况： SCI

摘要： Cold stress is a major adverse environmental factor that affects plant growth, development, productivity and quality. In the present study, comparative genome-wide transcriptome analysis on two tobacco (Nicotiana tobacum L.) cultivars, cold-tolerant NC567 and cold-sensitive Taiyan8, was performed using RNA-seq technology. After the first assembly, total length of unigenes is from 101,308,644 to 123,781,795 bp, the N50 length is from 1357 to 1475 bp, and 152,688 unigenes in NC567 and 144,160 unigenes in Taiyan8 were identified, respectively. Functional classification of cold-responsive (COR) genes showed that the genes involved in cell wall metabolism, transcription factors, ubiquitin-proteasome system (UPS) and signaling are over-represented, and the COR genes are specifically induced during cold stress in NC567. Pathway analysis revealed the significant enrichment of the COR genes in plant circadian clock. Taken together, the present study suggested the positive roles of the highly induced expression of the COR genes and the conserved mechanism of circadian clock related genes in tobacco response to cold stress, and provided some valuable genes for crop improvement to cope with cold stress. (C) 2015 Elsevier Inc. All rights reserved.

分类号： Q5

  • 相关文献

[1]Comparative proteomics analysis revealed increased expression of photosynthetic proteins in transgenic tobacco by overexpression of AtCBF1 gene. Cheng, Han,Cai, Haibin,An, Zewei,Huang, Huasun. 2013

[2]Overexpression of Arabidopsis CBF1 gene in transgenic tobacco alleviates photoinhibition of PSII and PSI during chilling stress under low irradiance. Yang, Jia-Sen,Meng, Jing-Jing,Bi, Yu-Ping,Xu, Ping-Li,Guo, Feng,He, Qi-Wei,Li, Xin-Guo,Yang, Jia-Sen,Meng, Jing-Jing,Bi, Yu-Ping,Xu, Ping-Li,Guo, Feng,Wan, Shu-Bo,Li, Xin-Guo,Wang, Ran,Wang, Ran.

[3]De novo transcriptome sequencing and gene expression profiling of Elymus nutans under cold stress. Fu, Juanjuan,Hu, Tianming,Yang, Peizhi,Miao, Yanjun,Shao, Linhui. 2016

[4]Transcriptome Analysis of Cucumber Roots Reveals Key Cold-Resistance Genes Induced by AM Fungi. Ma, Jun,Sun, Chao,Bai, Longqiang,Dong, Rongrong,Yan, Yan,Yu, Xianchang,He, Chaoxing,Li, Yansu,Ma, Jun,Zou, Zhirong,Sun, Chao. 2018

[5]The antioxidative defense system is involved in the premature senescence in transgenic tobacco (Nicotiana tabacum NC89). Liu, Yu,Wang, Lu,Liu, Heng,Zhao, Rongrong,Liu, Bin,Zhang, Yuanhu,Fu, Quanjuan. 2016

[6]NtPHYB1(K326), a homologous gene of Arabidopsis PHYB, positively regulates the content of phenolic compounds in tobacco. Zhao, Jiehong,Zhang, Jie,Li, Zhenhua,Yu, Jing,Yu, Shizhou,Guo, Yushuang,Fu, Yongfu,Zhang, Xiaomei,Han, Jie.

[7]Molecular cloning and functional analysis of one ZEITLUPE homolog GmZTL3 in soybean. Zhang, Xiao-Mei,Fu, Yong-Fu,Xue, Zheng-Gang,Chen, Xin-Jian,Lei, Chen-Fang,Chen, Xin-Jian.

[8]Arabidopsis cryptochrome 1 functions in nitrogen regulation of flowering. Zheng, Chong,Zhao, Zhong-Yi,Wang, Yu,Niu, Guoqi,Bao, Fang,Hu, Yong,Cao, Ying,Ma, Ligeng,Xiao, Wei,He, Yikun,Yuan, Shu,Zhang, Zhong-Wei,Feng, Ling-Yang,Wang, Chang-Quan,Zhao, Zhong-Yi,Lin, Hong-Hui,Wang, Jian-Hui,Feng, Hong,Xu, Fei,Wang, Haiyang,Kong, Dong-Dong.

[9]OsBBX14 delays heading date by repressing florigen gene expression under long and short-day conditions in rice. Bai, Bo,Zhao, Jie,Li, Yaping,Zhou, Jinjun,Xie, Xianzhi,Li, Yaping,Zhang, Fang,Chen, Fan.

[10]Photoperiodism dynamics during the domestication and improvement of soybean. Zhang, Sheng-Rui,Wang, Zhongyu,Ren, Yao,Liu, Jun,Liu, Bin,Wang, Huan,Niu, Lifang,Ren, Yao. 2017

[11]The antiphasic regulatory module comprising CDF5 and its antisense RNA FLORE links the circadian clock to photoperiodic flowering. Henriques, Rossana,Wang, Huan,Liu, Jun,Huang, Li-Fang,Chua, Nam-Hai,Henriques, Rossana,Boix, Marc,Liu, Jun. 2017

[12]Evidence for the circadian gene period as a proximate mechanism of protandry in a pollinating fig wasp. Gu, Hai-Feng,Xiao, Jin-Hua,Wang, Bo,Jia, Ling-Yi,Huang, Da-Wei,Gu, Hai-Feng,Jia, Ling-Yi,Dunn, Derek W.,Niu, Li-Ming,Huang, Da-Wei. 2014

[13]GmPLP1, a PAS/LOV protein, functions as a possible new type of blue light photoreceptor in soybean. Li, Yongguang,Zhang, Yanzheng,Li, Mengting,Jing, Ya,Zhang, Yuhang,Zhao, Lin,Li, Wenbin,Luo, Qiulan,Luo, Qiulan,Mallano, Ali Inayat. 2018

[14]Maternal chitosan oligosaccharide supplementation affecting expression of circadian clock genes, and possible association with hepatic cholesterol accumulation in suckling piglets. Xie, Chunyan,Wu, Xin,Guo, Xiaoyun,Long, Cimin,Yin, Yulong,Wu, Xin,Yin, Yulong,Li, Siming,Hu, Chien-An Andy,Yin, Yulong.

[15]A collection of 10,096 indica rice full-length cDNAs reveals highly expressed sequence divergence between Oryza sativa indica and japonica subspecies. Liu, Xiaohui,Lu, Tingting,Yu, Shuliang,Li, Ying,Huang, Yuchen,Huang, Tao,Zhang, Lei,Zhu, Jingjie,Zhao, Qiang,Fan, Danlin,Mu, Jie,Shangguan, Yingying,Feng, Qi,Guan, Jianping,Ying, Kai,Zhang, Yu,Lin, Zhixin,Sun, Zongxiu,Qian, Qian,Lu, Yuping,Han, Bin.

[16]Phytochrome B Negatively Affects Cold Tolerance by Regulating OsDREB1 Gene Expression through Phytochrome Interacting Factor-Like Protein OsPIL16 in Rice. He, Yanan,Li, Yaping,Cui, Lixin,Xie, Lixia,Zheng, Chongke,Zhou, Guanhua,Zhou, Jinjun,Xie, Xianzhi,Li, Yaping,Cui, Lixin. 2016

[17]Protein Kinase LTRPK1 Influences Cold Adaptation and Microtubule Stability in Rice. Liu, Wei,Fang, Xiaoliang,Wang, Qingguo,Li, Zhen,Yao, Fangyin,Hou, Lei,Ji, Shuxia,Dai, Shaojun,Fang, Xiaoliang. 2013

[18]Genome-Wide Analysis of Gene Expression Provides New Insights into Cold Responses in Thellungiella salsuginea. Wang, Jiangshan,Cui, Feng,Hou, Lei,Zhao, Shuzhen,Xia, Han,Qiu, Jingjing,Li, Tingting,Zhang, Ye,Wang, Xingjun,Zhao, Chuanzhi,Wang, Jiangshan,Zhang, Quan,Qiu, Jingjing,Wang, Xingjun,Zhao, Chuanzhi. 2017

[19]The protective effects of vitamin C on apoptosis, DNA damage and proteome of pufferfish (Takifugu obscurus) under low temperature stress. Cheng, Chang-Hong,Liang, Hai-Yan,Luo, Sheng-Wei,Wang, An-Li,Ye, Chao-Xia. 2018

[20]Proteomics Dissection of Cold Responsive Proteins Based on PEG Fractionation in Arabidopsis. Wang Shang,Xi Jinghui,Li Shanyu,Liu Xiangguo,Hao Dongyun. 2014

作者其他论文 更多>>

微信小程序