Characterization of the mitochondrial genome of the Malabar trevally Carangoides malabaricus and related phylogenetic analyses

文献类型： 外文期刊

第一作者： Li, Min

作者： Li, Min;Huang, Zirong;Chen, Zuozhi;Li, Min

作者机构：

关键词： Carangoides malabaricus;Carangidae;mitochondrial genome

期刊名称：MITOCHONDRIAL DNA PART A （ 影响因子：1.514； 五年影响因子：0.707 ）

ISSN：

年卷期：

页码：

收录情况： SCI

摘要： The Malabar trevally Carangoides malabaricus is a widely distributed inshore fish species and commercially important in some tropical regions. This study presented the complete mitochondrial genome of C. malabaricus as well as its phylogenetic position in Carangidae. The entire sequence was 16,561 bp in length, including the typical structure of 13 protein-coding genes, 22 tRNA genes, 2 rRNA genes, 1 control regions and 1 L-strand replication origin. The arrangement of the genes was in line with other teleosts. The genome was composed of 29.6% C, 27.8% A, 26.2% T and 16.4% G, showing an obvious anti G bias. Phylogenetic analyses using the concatenated sequence of the protein-coding genes showed similar results in the Neighbour-Joining and Bayesian inference trees. Three clades were formed as Subfamilies Caranginae, Seriolinae and Trachinotinae in Carangidae based on the current dataset. C. malabaricus was most closely related to the species in the same genus.

分类号： Q7

  • 相关文献

[1]Mitochondrial genome of the Torpedo scad Megalaspis cordyla (Perciformes: Carangidae): genome characterization and phylogenetic consideration. Li, Min,Li, Yufang,Chen, Zuozhi,Li, Min,Li, Yufang. 2016

[2]Organization and characterization of the mitochondrial genome of the Razorbelly scad Alepes kleinii (Perciformes: Carangidae). Li, Min,Zou, Keshu,Li, Min,Zou, Keshu. 2016

[3]Complete mitochondrial genome of the bigeye scad Selar crumenophthalmus (Perciformes: Carangidae). Li, Min,Chen, Zuozhi,Zou, Keshu,Li, Min,Zou, Keshu.

[4]Characterization of the mitochondrial genome of the Whitefin trevally Carangoides equula (Perciformes: Carangidae): a novel initiation codon for ATP6 gene. Zou, Keshu,Li, Min,Zou, Keshu,Li, Min.

[5]Whole mitogenome of the Japanese scad Decapterus maruadsi (Perciformes: Carangidae). Li, Min,Chen, Zuozhi,Chen, Tao,Xiong, Dan,Fan, Jiangtao,Liang, Peiwen,Li, Min,Xiong, Dan.

[6]Complete mitochondrial genome of the African pompano Alectis ciliaris (Perciformes: Carangidae). Li, Yufang,Chen, Zuozhi,Zhang, Peng,Liang, Peiwen,Chen, Sen,Guo, Yihui,Li, Min,Li, Yufang,Li, Min.

[7]Characterization of the mitochondrial genome of the Shortfin scad Decapterus macrosoma (Perciformes: Carangidae). Li, Min,Zhang, Peng,Sun, Dianrong,Chen, Tao,Fan, Jiangtao,Zou, Keshu,Chen, Zuozhi,Li, Min,Zou, Keshu.

[8]Description of the mitochondrial genome of yellowtail scad Atule mate (Perciformes: Carangidae). Li, Min,Li, Yufang,Chen, Zuozhi,Li, Min,Li, Yufang,Chen, Zuozhi. 2016

[9]Complete mitochondrial genome of Florida pompano Trachinotus carolinus (Teleostei, Carangidae). Zhang, Dianchang,Wang, Long,Guo, Huayang,Ma, Zhenhua,Zhang, Nan,Jiang, Shigui,Zhang, Dianchang,Jiang, Shigui,Wang, Long,Lin, Junda.

[10]Mitochondrial genome of the Mackerel scad Decapterus macarellus (Perciformes: Carangidae). Zou, Keshu,Chen, Zuozhi,Zhang, Peng,Li, Min,Zou, Keshu,Li, Min.

[11]The complete mitochondrial genome of longfin yellowtail S. rivoliana (Perciformes: Carangidae). Chen, Zuozhi,Li, Yufang,Liang, Peiwen,Li, Min,Chen, Zuozhi,Li, Min.

[12]Seasonal variations in diversity and abundance of surface ichthyoplankton in the northern South China Sea. Li Kaizhi,Yin Jianqiang,Huang Liangmin,Lin Zhaojin. 2014

[13]The complete mitochondrial genome of snubnose pompano Trachinotus blochii (Teleostei, Carangidae). Zhang, Dianchang,Wang, Long,Guo, Huayang,Ma, Zhenhua,Jiang, Shigui,Zhang, Dianchang,Jiang, Shigui,Wang, Long.

[14]Phylogenetic studies of Petaurista petauri based on complete mitochondrial DNA sequences. Hu, Jie,Li, Dayong,Zhou, Wenliang,Chen, Qizhu,Yang, Yumin,Krzton, Ali. 2016

[15]Mitochondrial genomes of the green macroalga Ulva pertusa (Ulvophyceae, Chlorophyta): novel insights into the evolution of mitogenomes in the Ulvophyceae. Liu, Feng,Liu, Feng,Melton, James T., III,Bi, Yuping. 2017

[16]Characterization of complete mitochondrial genome of Dezhou donkey (Equus asinus) and evolutionary analysis. Sun, Yan,Jiang, Qiang,Yang, Chunhong,Wang, Xiuge,Ju, Zhihua,Huang, Jinming,Zhong, Jifeng,Wang, Changfa,Tian, Fang,Wang, Yinchao,Zhou, Xiangshan,Ma, Yong.

[17]The complete mitochondrial genome of the Endangered Hucho bleekeri ( Salmonidae: huchen). Zhang, Shuhuan,Wei, Qiwei,Du, Hao,Li, Luoxin. 2016

[18]The complete mitochondrial genome sequence of Sarcochellichthys lacustris (Dybowski). Wu, Jing,Cao, Dingchen,Lv, Weihua,Zheng, Xianhu,Sun, Xiaowen,Wu, Jing. 2015

[19]Advances in the study of helminth mitochondrial genomes and their associated applications. Jia WanZhong,Yan HongBin,Ni XingWei,Lou ZhongZi,Li HongMin,Cao Ping,Cai XuePeng. 2012

[20]Complete mitochondrial genome of Japanese bigeye (Pristigenys niphonia): genome characterization and phylogenetic analysis. Xu, Bo,Zhou, Haizhu,Gou, Changlong,Dong, Wenlong,Wang, Yu,Gao, Yunhang,Ma, Hongxia,Wang, Yingzhe. 2016

作者其他论文 更多>>

微信小程序