Identification and characterization of a LTR retrotransposon from the genome of Cyprinus carpio var. Jian

文献类型： 外文期刊

第一作者： Cao, Liping

作者： Cao, Liping;Yin, Guojun;Cao, Zheming;Bing, Xuwen;Ding, Weidong

作者机构：

关键词： Cyprinus carpio var. Jian;Retrotransposon;Copy number;Fluorescent in situ hybridization

期刊名称：GENETICA （ 影响因子：1.082； 五年影响因子：1.489 ）

ISSN：

年卷期：

页码：

收录情况： SCI

摘要： A Ty3/gypsy-retrotransposon-type transposon was found in the genome of the Jian carp (Cyprinus carpio var. Jian) in a previous study (unpublished), and was designated a JRE retrotransposon (Jian retrotransposon). The full-length JRE retrotransposon is 5126 bp, which includes two long terminal repeats of 470 bp at the 5' end and 453 bp at the 3' end, and two open reading frames between them: 4203 bp encoding the group-specific antigen (GAG) and polyprotein (POL). The pol gene has a typical Ty3/gypsy retrotransposon structure, and the gene order is protease, reverse transcriptase, RNase H, and integrase (PR-RT-RH-IN). A phylogenetic analysis of the pol gene showed that it has similarities of 40.7, 40, and 32.8 %, to retrotransposons of Azumapecten farreri, Mizuhopecten yessoensis, and Xiphophorus maculatus, respectively. Therefore, JRE might belong to the JULE retrotransposon family. The copy number of the JRE transposon in the genome of the Jian carp is 124, determined with real-time quantitative PCR. The mRNA of the JRE retrotransposon is expressed in five Jian carp tissues, the liver, kidney, blood, muscle, and gonad, and slightly higher in the kidney and liver than in the other tissues.

分类号： Q3

  • 相关文献

[1]Visualization of Oryza eichingieri chromosomes in intergenomic hybrid plants from O-sativa x O-eichingeri via fluorescent in situ hybridization. Yan, HH,Min, SK,Zhu, LH. 1999

[2]Identification of a germ cell marker gene, the dead end homologue, in Chinese sturgeon Acipenser sinensis. Yang Xiaoge,Ye Huan,Wei Qiwei,Yang Xiaoge,Yue Huamei,Ye Huan,Li Chuangju,Wei Qiwei,Yue Huamei,Li Chuangju,Wei Qiwei.

[3]Primary investigation on GISH-NOR in cotton. Liu, SH,Wang, KB,Song, GL,Wang, CY,Liu, F,Li, SH,Zhang, XD,Wang, YH.

[4]Genetic Relationships Among Five Basic Genomes St, E, A, B and D in Triticeae Revealed by Genomic Southern and in situ Hybridization. Liu, Zhao,Li, Dayong,Zhang, Xueyong.

[5]A genome-specific repetitive DNA sequence from Oryza eichingeri: characterization, localization, and introgression to O-sativa. Yan, HH,Liu, GQ,Cheng, ZK,Li, XB,Liu, GZ,Min, SK,Zhu, LH. 2002

[6]Divergence between C-melo and African Cucumis Species Identified by Chromosome Painting and rDNA Distribution Pattern. Li, Kunpeng,Sun, Jianying,Li, Zongyun,Han, Yonghua,Wang, Huaisong,Wang, Jiming.

[7]Young but not relatively old retrotransposons are preferentially located in gene-rich euchromatic regions in tomato (Solanum lycopersicum) plants. Yingxiu Xu,Jianchang Du.

[8]Retrotransposon- and microsatellite sequence-associated genomic changes in early generations of a newly synthesized allotetraploid Cucumis x hytivus Chen & Kirkbride. Lou, Qunfeng,Wu, Zhiming,Wang, Dong,Mbira, Kere George,Chen, Jinfeng,Jiang, Biao,Wu, Zhiming,Zhang, Wanping,Weng, Yiqun. 2011

[9]Wheat centromeric retrotransposons: the new ones take a major role in centromeric structure. Li, Baochun,Heng, Yanfang,Hao, Weiwei,Liu, Zhao,Yue, Wei,Zhang, Xueyong,Choulet, Frederic,Paux, Etienne,Feuillet, Catherine,Choulet, Frederic,Paux, Etienne,Feuillet, Catherine,Heng, Yanfang,Jin, Weiwei. 2013

[10]Structural organization of the barley D-hordein locus in comparison with its orthologous regions of wheat genomes. Gu, YQ,Anderson, OD,Londeore, CF,Kong, XY,Chibbar, RN,Lazo, GR. 2003

[11]Genome-wide characterization of long terminal repeat-retrotransposons in apple reveals the differences in heterogeneity and copy number between Ty1-copia and Ty3-gypsy retrotransposons. Sun, Hai-Yue,Dai, Hong-Yan,Zhao, Gui-Ling,Ma, Yue,Ou, Chun-Qing,Li, He,Li, Lin-Guang,Zhang, Zhi-Hong,Zhao, Gui-Ling,Li, Lin-Guang. 2008

[12]DKRE1-The first full-length Ty1-copia-like retrotransposon in persimmon: Isolation, characteristic and potential involvement in occurrence of bud mutations. Du, Xiaoyun,Wang, Yanbo,Zeng, Ming,Xie, Feng,Guan, Changfei,Mo, Rongli,Zhang, Qinglin,Luo, Zhengrong.

[13]Isolation of two new retrotransposon sequences and development of molecular and cytological markers for Dasypyrum villosum (L.). Jiang, Yun,Guo, Yuanlin,Deng, Guangbing,Yu, Maoqun,Long, Hai,Xuan, Pu,Zhang, Jie.

[14]LTR retrotransposons cause expression changes of adjacent genes in early generations of the newly formed allotetraploid Cucumis hytivus. Jia, Li,Lou, Qunfeng,Wang, Dong,Chen, Jinfeng,Jiang, Biao.

[15]Two Delta 6-desaturase-like genes in common carp (Cyprinus carpio var. Jian): Structure characterization, mRNA expression, temperature and nutritional regulation. Ren, Hong-tao,Yu, Ju-hua,Xu, Pao,Ren, Hong-tao,Zhang, Guang-qin,Li, Jian-lin,Tang, Yong-kai,Li, Hong-xia,Yu, Ju-hua,Xu, Pao. 2013

[16]Molecular cloning, characterization and expression analysis of multiple leptin genes in Jian carp (Cyprinus carpio var. Jian). Tang, Yongkai,Yu, Juhua,Xu, Pao,Tang, Yongkai,Yu, Juhua,Li, Hongxia,Xu, Pao,Li, Jianlin,Ren, Hongtao. 2013

[17]Identification of housekeeping genes suitable for gene expression analysis in Jian carp (Cyprinus carpio var. jian). Tang, Yong-kai,Yu, Ju-hua,Xu, Pao,Li, Jian-lin,Li, Hong-xia,Tang, Yong-kai,Yu, Ju-hua,Xu, Pao,Ren, Hong-tao. 2012

[18]Anti-inflammatory and hepatoprotective effects of glycyrrhetinic acid on CCl4-induced damage in precision-cut liver slices from Jian carp (Cyprinus carpio var. jian) through inhibition of the nf-kB pathway. Cao, Liping,Ding, Weidong,Jia, Rui,Du, Jingliang,Wang, Tao,Zhang, Chunyun,Gu, Zhengyan,Yin, Guojun,Cao, Liping,Ding, Weidong,Jia, Rui,Du, Jingliang,Wang, Tao,Zhang, Chunyun,Gu, Zhengyan,Yin, Guojun.

[19]Two Elovl5-like elongase genes in Cyprinus carpio var. Jian: Gene characterization, mRNA expression, and nutritional regulation. Ren, H. -T.,Huang, Y.,Tang, Y. -K.,Yu, J. -H.,Xu, P..

[20]Single nucleotide polymorphisms of Delta 6-desaturase and Elovl5 segments and their associations with common carp (Cyprinus carpio) growth traits. Ren, H.,Yu, J.,Xu, P.,Tang, Y.,Ren, H.. 2015

作者其他论文 更多>>

微信小程序