Transcriptome analysis reveals salt-stress-regulated biological processes and key pathways in roots of peanut (Arachis hypogaea L.)

文献类型： 外文期刊

第一作者： Chen, Na

作者： Chen, Na;Chi, Xiaoyuan;Zhang, Zhimeng;Pan, Lijuan;Chen, Mingna;Wang, Tong;Wang, Mian;Yang, Zhen;Yu, Shanlin;Su, Maowen;Chi, Xiaoyuan

作者机构：

关键词： Transcriptome analysis;Microarray;Salt stress;Peanut (Arachis hypogaea L.)

期刊名称：GENES & GENOMICS （ 影响因子：1.839； 五年影响因子：1.329 ）

ISSN：

年卷期：

页码：

收录情况： SCI

摘要： The cultivated peanut is important oil crop and salt stress seriously influences its development and yield. Tolerant varieties produced using transgenic techniques can effectively increase peanut plantation area and enhance its yields. However, little is known about how gene expression is regulated by salt stress in peanut. In this study, we screened genes regulated by salt stress in peanut roots using microarray technique. In total, 4828 up-regulated and 3752 down-regulated probe sets were successfully identified in peanut roots subjected to 3 and 48 h of salt stress. Data analysis revealed that different response groups existed between the up and down-regulated probe sets. The main up-regulated biological processes involved in salt stress responses included transcription regulation, stress response, and metabolism and biosynthetic processes. The main down-regulated biological processes included transport processes, photosynthesis and development. The Kyoto encyclopedia of genes and genomes pathway analysis indicated that metabolic pathway, biosynthesis of unsaturated fatty acids and plant-pathogen interaction, were mainly up-regulated in peanut under salt stress. However, photosynthesis and phenylalanine metabolism were mainly down-regulated during salt stress. The function of some probe sets in salt stress regulation was not clarified (e.g., protein functioning in cell cycle regulation and xylem development). Many of the genes we identified lacked functional annotations and their roles in response to salt stress are yet to be elucidated. These results identified some candidate genes as potential markers and showed an overview of the transcription map, which may yield some useful insights into salt-mediated signal transduction pathways in peanut.

分类号： Q

  • 相关文献

[1]A Genome-Wide Expression Profile of Salt-Responsive Genes in the Apple Rootstock Malus zumi. Liu, Jia,Jiang, Yuzhuang,Xu, Xuefeng,Han, Zhenhai,Kong, Jin,Liu, Jia,Tan, Dunxian,Allan, Andrew C.. 2013

[2]Transcriptome profiling of peanut gynophores revealed global reprogramming of gene expression during early pod development in darkness. Xia, Han,Zhao, Chuanzhi,Hou, Lei,Li, Aiqin,Zhao, Shuzhen,Bi, Yuping,An, Jing,Wan, Shubo,Wang, Xingjun,Bi, Yuping,Wan, Shubo,Wang, Xingjun,Bi, Yuping,An, Jing,Zhao, Yanxiu,Wang, Xingjun. 2013

[3]High efficiency in vitro plant regeneration from epicotyl explants of Chinese peanut cultivars. Shan, Lei,Tang, Guiying,Xu, Pingli,Liu, Zhanji,Bi, Yuping,Shan, Lei,Tang, Guiying,Xu, Pingli,Liu, Zhanji,Bi, Yuping,Shan, Lei,Tang, Guiying,Xu, Pingli,Liu, Zhanji,Bi, Yuping.

[4]Isolation and characterization of a stress responsive small GTP-binding protein AhRabG3b in peanut (Arachis hypogaea L.). Yu, Shan-Lin,Sui, Jiong-Ming,Li, Rui,Fan, Qian-Cheng,Zheng, Chun-Hua,Wang, Jing-Shan,Qiao, Li-Xian,Song, Lin. 2013

[5]Modified AnM technique in combination with black and transparent film mulching in peanut production. Qin, Feifei,Takano, Tetsuo,Qin, Feifei,Xu, Hui-lian,Qin, Feifei. 2012

[6]Metabolic changes of peanut (Arachis hypogaea L.) buds in response to low temperature (LT). Wang, X. J.,Sun, D. L.,Bian, N. F.,Zhang, Z. M.,Wang, X.,Xu, Z. J.,Qi, Y. J.,Shen, Y..

[7]Peanut violaxanthin de-epoxidase alleviates the sensitivity of PSII photoinhibition to heat and high irradiance stress in transgenic tobacco. Yang, Sha,Meng, De-Yun,Hou, Lin-Lin,Li, Yan,Guo, Feng,Meng, Jing-Jing,Li, Xin-Guo,Wan, Shu-Bo,Meng, De-Yun,Hou, Lin-Lin.

[8]Mutant Transcriptome Sequencing Provides Insights into Pod Development in Peanut (Arachis hypogaea L.). Wan, Liyun,Li, Bei,Lei, Yong,Yan, Liying,Ren, Xiaoping,Chen, Yuning,Jiang, Huifang,Zhang, Juncheng,Liao, Boshou,Dai, Xiaofeng,Guo, Wei,Chen, Ao. 2017

[9]Quantitative trait locus analysis for pod- and kernel-related traits in the cultivated peanut (Arachis hypogaea L.). Chen, Weigang,Jiao, Yongqing,Cheng, Liangqiang,Huang, Li,Liao, Boshou,Tang, Mei,Ren, Xiaoping,Zhou, Xiaojing,Chen, Yuning,Jiang, Huifang. 2016

[10]Generation of peanut mutants by fast neutron irradiation combined with in vitro culture. Wang, Jing-Shan,Sui, Jiong-Ming,Qiao, Li-Xian,Xie, Yong-Dun,Guo, Hui-Jun,Liu, Lu-Xiang,Zhao, Li-Lan,Yu, Shan-Lin. 2015

[11]In vitro mutagenesis and directed screening for salt-tolerant mutants in peanut. Zhao, Ming-Xia,Sun, Hai-Yan,Ji, Rui-Rui,Sui, Jiong-Ming,Qiao, Li-Xian,Wang, Jing-Shan,Hu, Xiao-Hui,Chen, Jing.

[12]Changes of antioxidative enzymes and cell membrane osmosis in tomato colonized by arbuscular mycorrhizae under NaCl stress. ZhongQun, He,ChaoXing, He,ZhiBin, Zhang,ZhiRong, Zou,HuaiSong, Wang.

[13]Comparative transcriptome analysis of cotton fiber development of Upland cotton (Gossypium hirsutum) and Chromosome Segment Substitution Lines from G. hirsutum x G. barbadense. Peng-tao Li,Mi Wang,Guo, Xiao-ping,Shi, Yu-zhen,Yuan, You-lu,Quan-wei Lu,Qun Ge,Md. Harun or Rashid,Ai-ying Liu,Ju-wu Gong,Hai-hong Shang,Wan-kui Gong,Jun-wen Li,Wei-wu Song,Li-xue Guo,Wei Su,Shao-qi Li,Xiao-ping Guo,Yu-zhen Shi,You-lu Yuan. 2017

[14]Analysis of sea-island cotton and upland cotton in response to Verticillium dahliae infection by RNA sequencing. Quan Sun,Huaizhong Jiang,Xiaoyan Zhu,Weina Wang,Xiaohong He,Yuzhen Shi,Youlu Yuan,Xiongming Du,Yingfan Cai. 2013

[15]Differential gene expression in porcine SK6 cells infected with wild-type and SAP domain-mutant foot-and-mouth disease virus. Ni, Zixin,Yang, Fan,Cao, Weijun,Zhang, Xiangle,Jin, Ye,Mao, Ruoqing,Du, Xiaoli,Li, Weiwei,Guo, Jianhong,Liu, Xiangtao,Zhu, Zixiang,Zheng, Haixue,Ni, Zixin. 2016

[16]Transcriptome Analysis Reveals Candidate Genes Involved in Gibberellin-Induced Fruit Setting in Triploid Loquat (Eriobotrya japonica). Jiang, Shuang,Luo, Jun,Xu, Fanjie,Zhang, Xueying,Jiang, Shuang,Luo, Jun,Xu, Fanjie,Zhang, Xueying. 2016

[17]Genome-wide transcriptome analysis of Chinese pollination-constant nonastringent persimmon fruit treated with ethanol. Luo, Chun,Zhang, Qinglin,Luo, Zhengrong,Luo, Chun. 2014

[18]Physiological Investigation and Transcriptome Analysis of Polyethylene Glycol (PEG)-Induced Dehydration Stress in Cassava. Fu, Lili,Ding, Zehong,Han, Bingying,Hu, Wei,Li, Yajun,Zhang, Jiaming. 2016

[19]Transcriptome analysis of genes involved in anthocyanins biosynthesis and transport in berries of black and white spine grapes (Vitis davidii). Sun, Lei,Fan, Xiucai,Zhang, Ying,Jiang, Jianfu,Sun, Haisheng,Liu, Chonghuai. 2016

[20]Mining for Candidate Genes in an Introgression Line by Using RNA Sequencing: The Anthocyanin Overaccumulation Phenotype in Brassica. Xie, Lulu,Li, Fei,Zhang, Shifan,Zhang, Hui,Qian, Wei,Li, Peirong,Zhang, Shujiang,Sun, Rifei. 2016

作者其他论文 更多>>

微信小程序