Transcriptome analysis of sika deer in China

文献类型： 外文期刊

第一作者： Jia, Bo-Yin

作者： Jia, Bo-Yin;Ba, Heng-Xing;Wang, Gui-Wu;Yang, Ying;Cui, Xue-Zhe;Peng, Ying-Hua;Zheng, Jun-Jun;Xing, Xiu-Mei;Yang, Fu-He

作者机构：

关键词： Sika deer;Genome;Transcriptome assembly;Profiling analysis

期刊名称：MOLECULAR GENETICS AND GENOMICS （ 影响因子：3.291； 五年影响因子：3.257 ）

ISSN：

年卷期：

页码：

收录情况： SCI

摘要： Sika deer is of great commercial value because their antlers are used in tonics and alternative medicine and their meat is healthy and delicious. The goal of this study was to generate transcript sequences from sika deer for functional genomic analyses and to identify the transcripts that demonstrate tissue-specific, age-dependent differential expression patterns. These sequences could enhance our understanding of the molecular mechanisms underlying sika deer growth and development. In the present study, we performed de novo transcriptome assembly and profiling analysis across ten tissue types and four developmental stages (juvenile, adolescent, adult, and aged) of sika deer, using Illumina paired-end tag (PET) sequencing technology. A total of 1,752,253 contigs with an average length of 799 bp were generated, from which 1,348,618 unigenes with an average length of 590 bp were defined. Approximately 33.2 % of these (447,931 unigenes) were then annotated in public protein databases. Many sika deer tissue-specific, age-dependent unigenes were identified. The testes have the largest number of tissue-enriched unigenes, and some of them were prone to develop new functions for other tissues. Additionally, our transcriptome revealed that the juvenile-adolescent transition was the most complex and important stage of the sika deer life cycle. The present work represents the first multiple tissue transcriptome analysis of sika deer across four developmental stages. The generated data not only provide a functional genomics resource for future biological research on sika deer but also guide the selection and manipulation of genes controlling growth and development.

分类号： Q7

  • 相关文献

[1]PeanutDB: an integrated bioinformatics web portal for Arachis hypogaea transcriptomics. Shu, Changlong,Zhang, Jie,Schmidt, Emily,Li, Pei,Lenox, Douglas,Liu, Lin,Liang, Chun,Schmidt, Emily,Lenox, Douglas,Liang, Chun. 2012

[2]Identification and molecular survey of Borrelia burgdorferi sensu lato in sika deer (Cervus nippon) from Jilin Province, north-eastern China. Zhai, Bintao,Zeng, Qiaoying,Zhai, Bintao,Niu, Qingli,Yang, Jifei,Liu, Zhijie,Liu, Junlong,Yin, Hong,Yin, Hong. 2017

[3]Caprine herpesvirus 2-associated malignant catarrhal fever of captive sika deer (Cervus nippon) in an intensive management system. Zhu, Hongwei,Huang, Qingrong,Zhang, Jianlong,Jiang, Linlin,Yu, Xin,Zhang, Xingxiao,Hu, Xiaoliang,Chu, Wenhui,Cheng, Shipeng. 2018

[4]Isolation of novel microsatellite markers and their application for genetic diversity and parentage analyses in sika deer. Yang, Wanyun,Zheng, Junjun,Wei, Haijun,Wang, Guiwu,Yang, Fuhe,Jia, Boyin. 2018

[5]Genome-wide analysis of DNA methylation in five tissues of sika deer (Cervus nippon). Yang, Chun,Liu, Wenyuan,Lu, Xiao,Li, Chunyi,Yang, Chun,Liu, Wenyuan,Lu, Xiao,Li, Chunyi,Znang, Yan. 2018

[6]Classification and phylogeny of sika deer (Cervus nippon) subspecies based on the mitochondrial control region DNA sequence using an extended sample set. Ba, Hengxing,Yang, Fuhe,Xing, Xiumei,Li, Chunyi,Ba, Hengxing,Yang, Fuhe,Xing, Xiumei,Li, Chunyi. 2015

[7]Effect of supplementation of lysine and methionine on growth performance, nutrients digestibility and serum biochemical indices for growing sika deer (Cervus Nippon) fed protein deficient diet. Huang, Jian,Zhang, Tie-Tao,Kun, Bao,Li, Guang-Yu,Wang, Kai-Ying. 2015

[8]Molecular detection and identification of piroplasms in sika deer (Cervus nippon) from Jilin Province, China. Liu, Junlong,Yang, Jifei,Guan, Guiquan,Liu, Aihong,Wang, Bingjie,Luo, Jianxun,Yin, Hong,Liu, Junlong,Yang, Jifei,Guan, Guiquan,Liu, Aihong,Wang, Bingjie,Luo, Jianxun,Yin, Hong. 2016

[9]Genome-Wide SNP Discovery and Analysis of Genetic Diversity in Farmed Sika Deer (Cervus nippon) in Northeast China Using Double-Digest Restriction Site-Associated DNA Sequencing. Ba, Hengxing,Jia, Boyin,Wang, Guiwu,Yang, Yifeng,Li, Chunyi,Kedem, Gilead. 2017

[10]Complete mitochondrial genome sequence of northeastern sika deer (Cervus nippon hortulorum). Shao, Yuanchen,Zha, Daiming,Xing, Xiumei,Su, Weilin,Liu, Huamiao,Zhang, Ranran.

[11]Seroprevalence and risk factors of Toxoplasma gondii infection in domestic sika deer (Cervus nippon) in northeastern China. Qin, Si-Yuan,Zhang, Xiao-Xuan,Cong, Wei,Zhou, Dong-Hui,Wang, Jin-Lei,Yin, Ming-Yang,Tan, Qi-Dong,Zhu, Xing-Quan,Qin, Si-Yuan,Zhang, Xiao-Xuan,Cong, Wei,Zhao, Quan,Zhu, Xing-Quan. 2014

[12]Antler Transformation is Advanced by Inversion of Antlerogenic Periosteum Implants in Sika Deer (Cervus nippon). Gao, Xiuhua,Wang, Wenying,Li, Chunyi. 2010

[13]Molecular detection and genetic characterization of Toxoplasma gondii infection in sika deer (Cervus nippon) in China. Cong, Wei,Qin, Si-Yuan,Zhu, Xing-Quan,Cong, Wei,Qian, Ai-Dong,Qin, Si-Yuan,Meng, Qing-Feng,Zou, Feng-Cai,Zhu, Xing-Quan.

[14]Molecular cloning and expression analysis of annexin A2 gene in sika deer antler tip. Xia, Yanling,Qu, Haomiao,Lu, Binshan,Zhang, Qiang,Li, Heping,Xia, Yanling. 2018

[15]Prevalence and genotypes of Enterocytozoon bieneusi in sika deer in Jilin province, Northeastern China. Zhang, Xiao-Xuan,Cong, Wei,Liu, Guo-Hua,Ni, Xiao-Ting,Ma, Jian-Gang,Zheng, Wen-Bin,Zhu, Xing-Quan,Zhang, Xiao-Xuan,Cong, Wei,Zhao, Quan,Zhu, Xing-Quan.

[16]Effects of dietary manganese supplementation on nutrient digestibility and production performance in male sika deer (Cervus Nippon). Bao, Kun,Wang, Kaiying,Wang, Xiaoxu,Zhang, Tietao,Liu, Hanlu,Li, Guangyu,Bao, Kun,Li, Guangyu.

[17]Uniqueness of the Gossypium mustelinum Genome Revealed by GISH and 45S rDNA FISH. Qiong Wu,Fang Liu,Shaohui Li,Guoli Song,Chunying Wang,Xiangdi Zhang,Yuhong Wang,David Stelly,Kunbo Wang. 2013

[18]Molecular cloning and characterization of a salinity stress-induced gene encoding DEAD-box helicase from the halophyte Apocynum venetum. H. H. Liu,J. Liu,S. L. Fan,M. Z. Song,X. L. Han,F. Liu,F. F. Shen.

[19]Ectopic expression of MNX gene from Arabidopsis thaliana involved in auxin biosynthesis confers male sterility in transgenic cotton (Gossypium hirsutum L.) plants. Yimei Gan,Yupeng Fan,Yehua Yang,Baosheng Dai,Dayu Gao,Xuekui Wang,Kunbo Wang,Mingjing Yao,Heyang Wen,Wenzhao Yu.

[20]The pomegranate (Punica granatum L.) genome and the genomics of punicalagin biosynthesis. Qin, Gaihua,Yi, Xingkai,Qi, Yongjie,Gao, Zhenghui,Pan, Haifa,Xu, Yiliu,Qin, Gaihua,Yi, Xingkai,Qi, Yongjie,Gao, Zhenghui,Pan, Haifa,Xu, Yiliu,Xu, Chunyan,Hu, Yudong,Xu, Xiangyang,Jian, Jianbo,Tian, Yinping,Yue, Zhen,Ming, Ray,Tang, Haibao,Ming, Ray,Guyot, Romain,Kramer, Elena M.. 2017

作者其他论文 更多>>

微信小程序