Genetic mapping and quantitative trait loci analysis of growth-related traits in the small abalone Haliotis diversicolor using restriction-site-associated DNA sequencing

文献类型: 外文期刊

第一作者: Ren, Peng

作者: Ren, Peng;You, Weiwei;Huang, Zekun;Guo, Qing;Chen, Nan;He, Peiru;Ke, Caihuan;Ren, Peng;Huang, Zekun;Guo, Qing;Chen, Nan;He, Peiru;Ke, Jinwei;Ke, Caihuan;Peng, Wenzhu;Peng, Wenzhu;Gwo, Jin-Chywan

作者机构:

关键词: Haliotis diversicolor;Generic mapping;Restriction-site-associated DNA sequencing;Single nucleotide polymorphism;Quantitative trait loci

期刊名称:AQUACULTURE ( 影响因子:4.242; 五年影响因子:4.723 )

ISSN:

年卷期:

页码:

收录情况: SCI

摘要: The small abalone (Haliotis diversicolor) is an important aquaculture species in southern China. Traditional breeding programs have been implemented for this species. But clue to long reproduction cycle of the small abalone, the traditional method takes too long. There is therefore an urgent need to accelerate molecular breeding in H. diversicolor. Here we report on the construction of a high-density genetic map and quantitative trait loci detection in the small abalone using an F1 moss population with 131 progeny based on restriction-site-associated DNA sequencing. The sex-averaged map spanned 2190.1 cM with a mean distance between single nucleotide polymorphisms (SNPs) of 0.59 cM. A total of 3717 SNPs were mapped on 16 linkage groups. There were 1728 SNPs on the female map and 2673 SNPs on the male map. The total length of the female and male map was 2197.8 and 1764.7 cM, respectively. Six growth-related traits (body weight, muscle weight, shell weight, shell length, shell width and shell height) were recorded to detect QTL. A total of 15 suggestive QTL were identified and most of them were found on LG11. A consensus QTL for six growth-related traits was detected on LG11. It suggests that these traits may be controlled by a common region. Our results would provide valuable tools which can be used for Marker-Assisted Selection (MAS) in breeding programs (AIL diversicolor.

分类号: S9

  • 相关文献

[1]Identification of quantitative trait loci for phosphorus use efficiency traits in rice using a high density SNP map. Wang, Kai,Cui, Kehui,Liu, Guoling,Xie, Weibo,Yu, Huihui,Huang, Jianliang,Nie, Lixiao,Shah, Farooq,Peng, Shaobing,Wang, Kai,Cui, Kehui,Liu, Guoling,Pan, Junfeng,Huang, Jianliang,Nie, Lixiao,Shah, Farooq,Peng, Shaobing,Pan, Junfeng,Shah, Farooq. 2014

[2]Molecular Mapping of the Major Resistance Quantitative Trait Locus qHS2.09 with Simple Sequence Repeat and Single Nucleotide Polymorphism Markers in Maize. Weng, Jianfeng,Hao, Zhuanfang,Xie, Chuanxiao,Li, Mingshun,Zhang, Degui,Bai, Li,Liu, Changlin,Zhang, Shihuang,Li, Xinhai,Liu, Xianjun,Wang, Zhenhua,Zhang, Lin,Wang, Jianjun.

[3]Expansin genes are candidate markers for the control of fruit weight in peach. Cao, Ke,Zhao, Pei,Zhu, Gengrui,Fang, Weichao,Chen, Changwen,Wang, Xinwei,Wang, Lirong.

[4]Genome-wide linkage mapping of QTL for physiological traits in a Chinese wheat population using the 90K SNP array. Gao, Fengmei,Liu, Jindong,Yang, Li,Xiao, Yonggui,Xia, Xianchun,He, Zhonghu,Gao, Fengmei,Wu, Xiaoxia,Gao, Fengmei,He, Zhonghu.

[5]Detection of abalone shrivelling syndrome-associated virus using loop-mediated isothermal amplification. Jiang, J-Z,Yang, R.,Zhang, H.,Liu, G-F,Su, Y-L,Wang, J-Y,Yang, R.,Zhang, H.,Zhu, Z-N,Wu, E-Y. 2014

[6]Nested PCR detection of abalone shriveling syndrome-associated virus in China. Jiang, Jing-Zhe,Luo, Li-Juan,Guo, Zhi-Xun,Liu, Guang-Feng,Su, You-Lu,Wang, Jiang-Yong,Liang, Ya-Yu,Zhuang, Jun. 2012

[7]Quantitative PCR detection for abalone shriveling syndrome-associated virus. Jiang Jing-Zhe,Zhang Han,Guo Zhi-Xun,Liu Guang-Feng,Su You-Lu,Wang Jiang-Yong,Zhu Zhen-Ni,Liang Ya-Yu,Zhang Han. 2012

[8]Construction of the BAC Library of Small Abalone (Haliotis diversicolor) for Gene Screening and Genome Characterization. Jiang, Likun,Xu, Jian,Jiang, Yanliang,Wang, Kai,Zhao, Zixia,Chen, Baohua,Zhao, Yunfeng,Xu, Peng,Jiang, Likun,Xu, Jian,Jiang, Yanliang,Wang, Kai,Zhao, Zixia,Chen, Baohua,Zhao, Yunfeng,Xu, Peng,You, Weiwei,Ke, Caihuan,Zhang, Xiaojun,Jiang, Likun,Chen, Baohua,Mahboob, Shahid,Al-Ghanim, Khalid A.,Mahboob, Shahid.

[9]Identification and involvement of ferritin in the response to pathogen challenge in the abalone, Haliotis diversicolor. He, Jian,Jiang, Jingzhe,Gu, Lu,Zhao, Manman,Wang, Ruixuan,Ye, Lingtong,Yao, Tuo,Wang, Jiangyong,Gu, Lu,Zhao, Manman.

[10]Functional annotation of an expressed sequence tag library from Haliotis diversicolor and analysis of its plant-like sequences. Jiang, Jing-Zhe,Guo, Zhi-Xun,Su, You-Lu,Wang, Rui-Xuan,Wang, Jiang-Yong,Zhang, Wei,Cai, Chen-Chen.

[11]Single nucleotide polymorphisms, haplotypes and combined genotypes of LAP3 gene in bovine and their association with milk production traits. Zheng, Xue,Ju, Zhihua,Wang, Ji,Li, Qiuling,Huang, Jinming,Zhong, Jifeng,Wang, Changfa,Zheng, Xue,Zhang, Aiwu. 2011

[12]A SNP in the 3 '-UTR of HSF1 in dairy cattle affects binding of target bta-miR-484. Li, Q. L.,Xia, P.,Wang, Y. J.,Wu, Z. Y.,Jia, Y. H.,Chang, S. M.,Zhang, Z. F.,Li, Q. L.,Chu, M. X.. 2015

[13]Identification of Splice Variants, Targeted MicroRNAs and Functional Single Nucleotide Polymorphisms of the BOLA-DQA2 Gene in Dairy Cattle. Hou, Qinlei,Huang, Jinming,Ju, Zhihua,Li, Qiuling,Li, Liming,Wang, Changfa,Sun, Tao,Wang, Lingling,Hou, Minghai,Zhong, Jifeng,Hang, Suqin.

[14]A comparative transcriptome analysis of two sets of backcross inbred lines differing in lint-yield derived from a Gossypium hirsutum x Gossypium barbadense population. Wu Man,Liyuan Zhang,Xihua Li,Xiaobing Xie,Wenfeng Pei,Jiwen Yu,Shuxun Yu,Jinfa Zhang. 2016

[15]An association between genetic variation in the roundabout, axon guidance receptor, homolog 2 gene and immunity traits in chickens. Shu, D. M.. 2014

[16]A genome-wide association study identifies major loci affecting the immune response against infectious bronchitis virus in chicken. Luo, Chenglong,Qu, Hao,Ma, Jie,Wang, Jie,Shu, Dingming,Hu, Xiaoxiang,Li, Ning,Luo, Chenglong,Qu, Hao,Ma, Jie,Wang, Jie,Shu, Dingming. 2014

[17]A dCAPS marker developed from a stress associated protein gene TaSAP7-B governing grain size and plant height in wheat. Wang Yi-xue,Li Run-zhi,Xu Qiao-fang,Chang Xiao-ping,Hao Chen-yang,Jing Rui-lian. 2018

[18]Identification of genome-wide single-nucleotide polymorphisms (SNPs) associated with tolerance to chromium toxicity in spring wheat (Triticum aestivum L.). Almas, Fakhrah,Hassan, Adeel,Bibi, Arfa,Ali, Masab,Lateef, Sadia,Mahmood, Tariq,Quraishi, Umar Masood,Rasheed, Awais. 2018

[19]Molecular characterization, expression, polymorphism of NR5A2 and its relationship with litter size in Hu sheep. Li, Y. X.,Zhang, J.,Qian, Y.,Meng, C. H.,Wang, H. L.,Zhong, S.,Cao, S. X.,Li, Q. F.,Li, Y. X.,Zhang, J.,Qian, Y.,Meng, C. H.,Wang, H. L.,Zhong, S.,Cao, S. X.,Tao, X. J.. 2015

[20]Polymorphism of the prolactin gene and its association with egg production traits in native Chinese ducks. Wang, Cui,Yu, Wenhua,Feng, Yanping,Peng, Xiuli,Gong, Yanzhang,Li, Shijun,Liang, Zhenhua. 2011

作者其他论文 更多>>