Draft genome of the peanut A-genome progenitor (Arachis duranensis) provides insights into geocarpy, oil biosynthesis, and allergens

文献类型： 外文期刊

第一作者： Chen, Xiaoping

作者： Chen, Xiaoping;Li, Haifen;Hong, Yanbin;Zhu, Fanghe;Zhou, Guiyuan;Zhong, Ni;Liu, Haiyan;Li, Shaoxiong;Li, Xingyu;Wen, Shijie;Liang, Xuanqiang;Li, Hongjie;Zhang, Xiaoyan;Li, Shuanzhu;Wang, Min;Wang, Shuping;Pandey, Manish K.;Garg, Vanika;Doddamani, Dadakhalandar;Upadhyaya, Hari;Khan, Aamir W.;Krishnamohan, Katta A. V. S.;Agarwal, Gaurav;Chitikineni, Annapurna;Sharma, Shivali;Janila, Pasupuleti;Li, Chunyan;Singh, Sube;Zhao, Jinming;Varshney, Rajeev K.;Yang, Qingli;Chi, Xiaoyuan;Pan, Lijuan;Chen, Mingna;Chen, Na;Wang, Tong;Sun, Jie;Wang, Mian;Yu, Lina;Yang, Zhen;Zhang, Chushu;Bi, Jie;Yu, Shanlin;Yang, Qingli;Zhang, Xiaojun;Wang, Xiyin;Guo, Hui;Pierce, Gary J.;Paterson, Andrew H.;Zhang, Guo-Qiang;Liu, Zhong-Jian;Zhang, Guo-Qiang;Liu, Zhong-Jian;Yu, Yue;Varshney, Rajeev K.;Varshney, Rajeev K.

作者机构：

关键词： Arachis duranensis;genome sequence;gene models;polyploidizations;gene duplication

期刊名称：PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA （ 影响因子：11.205； 五年影响因子：12.291 ）

ISSN：

年卷期：

页码：

收录情况： SCI

摘要： Peanut or groundnut (Arachis hypogaea L.), a legume of South American origin, has high seed oil content (45-56%) and is a staple crop in semiarid tropical and subtropical regions, partially because of drought tolerance conferred by its geocarpic reproductive strategy. We present a draft genome of the peanut A-genome progenitor, Arachis duranensis, and 50,324 protein-coding gene models. Patterns of gene duplication suggest the peanut lineage has been affected by at least three polyploidizations since the origin of eudicots. Resequencing of synthetic Arachis tetraploids reveals extensive gene conversion in only three seed-to-seed generations since their formation by human hands, indicating that this process begins virtually immediately following polyploid formation. Expansion of some specific gene families suggests roles in the unusual subterranean fructification of Arachis. For example, the S1Fa-like transcription factor family has 126 Arachis members, in contrast to no more than five members in other examined plant species, and is more highly expressed in roots and etiolated seedlings than green leaves. The A. duranensis genome provides a major source of candidate genes for fructification, oil biosynthesis, and allergens, expanding knowledge of understudied areas of plant biology and human health impacts of plants, informing peanut genetic improvement and aiding deeper sequencing of Arachis diversity.

分类号： N

  • 相关文献

[1]Alteration of gene expression profile in the roots of wild diploid Arachis duranensis inoculated with Ralstonia solanacearum. Chen, Y. N.,Ren, X. P.,Zhou, X. J.,Huang, L.,Huang, J. Q.,Yan, L. Y.,Lei, Y.,Wei, W. H.,Jiang, H. F.,Qi, Y..

[2]Genome-wide identification and evolutionary analysis of nucleotide-binding site-encoding resistance genes in Lotus japonicus (Fabaceae). Song, H.,Wang, P. F.,Li, T. T.,Xia, H.,Zhao, S. Z.,Hou, L.,Zhao, C. Z.. 2015

[3]Genome-Wide Identification and Characterization of WRKY Gene Family in Peanut. Song, Hui,Wang, Pengfei,Zhao, Chuanzhi,Bi, Yuping,Wang, Xingjun,Lin, Jer-Young. 2016

[4]Functional opsin retrogene in nocturnal moth. Xiao, Haijun,Wu, Kongming,Xu, Pengjun,Feuda, Roberto,Lu, Bin,Graham, Robert I.. 2016

[5]Divergent Evolutionary Pattern of Starch Biosynthetic Pathway Genes in Grasses and Dicots. Li, Chun,Li, Qi-Gang,Zhang, Yuan-Ming,Li, Chun,Dunwell, Jim M.. 2012

[6]Gene duplication and an accelerated evolutionary rate in 11S globulin genes are associated with higher protein synthesis in dicots as compared to monocots. Li, Chun,Li, Meng,Zhang, Yuan-Ming,Li, Chun,Dunwell, Jim M.. 2012

[7]Evolution and Expansion of the Prokaryote-Like Lipoxygenase Family in the Brown Alga Saccharina japonica. Teng, Linhong,Han, Wentao,Fan, Xiao,Xu, Dong,Zhang, Xiaowen,Ye, Naihao,Teng, Linhong,Ye, Naihao,Dittami, Simon M.,Dittami, Simon M.. 2017

[8]Two chitinase 5 genes from Locusta migratoria: Molecular characteristics and functional differentiation. Li, Daqi,Zhang, Jianqin,Wang, Yan,Liu, Xiaojian,Ma, Enbo,Sun, Yi,Zhang, Jianzhen,Sun, Yi,Li, Sheng,Zhu, Kun Yan.

[9]Age distribution patterns of human gene families: divergent for Gene Ontology categories and concordant between different subcellular localizations. Liu, Gangbiao,Zou, Yangyun,Su, Zhixi,Liu, Gangbiao,Zou, Yangyun,Gu, Xun,Su, Zhixi,Cheng, Qiqun,Zeng, Yanwu,Gu, Xun.

[10]Molecular evolution of the rice miR395 gene family. Guddeti, S,Zhang, DC,Li, AL,Leseberg, CH,Kang, H,Li, XG,Zhai, WX,Johns, MA,Mao, L.

[11]Rapid evolution and complex structural organization in genomic regions harboring multiple prolamin genes in the polyploid wheat genome. Gao, Shuangcheng,Gu, Yong Qiang,Wu, Jiajie,Coleman-Derr, Devin,Huo, Naxin,Crossman, Curt,Jia, Jizeng,Zuo, Qi,Ren, Zhenglong,Anderson, Olin D.,Kong, Xiuying.

[12]Gene duplication and transfer events in plant mitochondria genome. Xiong, Ai-Sheng,Peng, Ri-He,Zhuang, Jing,Gao, Feng,Zhu, Bo,Fu, Xiao-Yan,Xue, Yong,Jin, Xiao-Fen,Tian, Yong-Sheng,Zhao, Wei,Yao, Quan-Hong. 2008

[13]Duplication and expression analysis of multicopy miRNA gene family members in Arabidopsis and rice. Jiang, DH,Yin, CS,Yu, AP,Zhou, XF,Liang, WQ,Yuan, Z,Xu, Y,Yu, QB,Wen, TQ,Zhang, DB. 2006

[14]The pattern of Phosphate transporter 1 genes evolutionary divergence in Glycine max L.. Fan, Chengming,Wang, Xu,Xiao, Chaowen,Jiang, Ying,Zhang, Xiaomei,Fu, Yong-Fu,Hu, Ruibo,Wang, Yahui,Zheng, Changying. 2013

[15]The expression and phylogenetic analysis of four AP3-like paralogs in the stamens, carpels, and single-whorl perianth of the paleoherb Asarum caudigerum. Zhao, Yin-He,Peng, Seng,Li, Cheng-Yun,Zhao, Yin-He,Peng, Seng,Li, Cheng-Yun,Larson-Rabin, Zachary,Li, De-Zhu,Wang, Guo-Ying.

[16]Duplication of acetylcholinesterase gene in diamondback moth strains with different sensitivities to acephate. Shi, Xueyan,Song, Dunlun,Liang, Pei,Gao, Xiwu,Zhang, Youjun,Li, Jianhong,Liu, Yong,Li, Ming,Matsumura, Masaya,Sanada-Morimura, Sachiyo,Minakuchi, Chieka,Tanaka, Toshiharu,Miyata, Tadashi. 2014

[17]Gene Duplication Analysis Reveals No Ancient Whole Genome Duplication but Extensive Small-Scale Duplications during Genome Evolution and Adaptation of Schistosoma mansoni. Wang, Shuai,Zhu, Xing-quan,Cai, Xuepeng. 2017

[18]Classification and expression diversification of wheat dehydrin genes. Wang, Yuezhi,Xu, Haibin,Zhu, Huilan,Tao, Ye,Zhang, Guangxiang,Zhang, Lixia,Zhang, Caiqin,Zhang, Zhengzhi,Ma, Zhengqiang,Wang, Yuezhi,Xu, Haibin,Zhu, Huilan,Tao, Ye,Zhang, Guangxiang,Zhang, Lixia,Zhang, Caiqin,Zhang, Zhengzhi,Ma, Zhengqiang,Wang, Yuezhi. 2014

[19]Gene duplication, transfer, and evolution in the chloroplast genome. Xiong, Ai-Sheng,Peng, Ri-He,Zhuang, Jing,Gao, Feng,Zhu, Bo,Fu, Xiao-Yan,Xue, Yong,Jin, Xiao-Feng,Tian, Yong-Sheng,Zhao, Wei,Yao, Quan-Hong.

[20]Comprehensive identification and expression analysis of Hsp90s gene family in Solanum lycopersicum. Zai, W. S.,Xiong, Z. L.,Zhang, H. L.,Ma, Y. R.,Li, Y. L.,Chen, Y. B.,Ye, S. G.,Zai, W. S.,Xiong, Z. L.,Zhang, H. L.,Ma, Y. R.,Li, Y. L.,Miao, L. X.. 2015

作者其他论文 更多>>

微信小程序