Bioinformatics Analysis of NBS-LRR Encoding Resistance Genes in Setaria italica

文献类型： 外文期刊

第一作者： Zhao, Yan

作者： Zhao, Yan;Weng, Qiaoyun;Song, Jinhui;Ma, Hailian;Yuan, Jincheng;Liu, Yinghui;Dong, Zhiping

作者机构：

关键词： NBS;LRR;Distribution;Motif;Bioinformatics analysis

期刊名称：BIOCHEMICAL GENETICS （ 影响因子：1.89； 五年影响因子：1.959 ）

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收录情况： SCI

摘要： In plants, resistance (R) genes are involved in pathogen recognition and subsequent activation of innate immune responses. The nucleotide-binding site-leucine-rich repeat (NBS-LRR) genes family forms the largest R-gene family among plant genomes and play an important role in plant disease resistance. In this paper, comprehensive analysis of NBS-encoding genes is performed in the whole Setaria italica genome. A total of 96 NBS-LRR genes are identified, and comprehensive overview of the NBS-LRR genes is undertaken, including phylogenetic analysis, chromosome locations, conserved motifs of proteins, and gene expression. Based on the domain, these genes are divided into two groups and distributed in all Setaria italica chromosomes. Most NBS-LRR genes are located at the distal tip of the long arms of the chromosomes. Setaria italica NBS-LRR proteins share at least one nucleotide-biding domain and one leucine-rich repeat domain. Our results also show the duplication of NBS-LRR genes in Setaria italica is related to their gene structure.

分类号： Q3

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