Population structure and association analysis of yield and grain quality traits in hybrid rice primal parental lines

文献类型： 外文期刊

第一作者： Wang, Yingheng

作者： Wang, Yingheng;Xie, Huaan;Wang, Yingheng;Zheng, Yanmei;Cai, Qiuhua;Mao, Xiaohui;Xie, Hongguang;Zhu, Yongsheng;Lian, Lin;Luo, Xi;Xie, Huaan;Zhang, Jianfu;Wang, Yingheng;Zheng, Yanmei;Cai, Qiuhua;Mao, Xiaohui;Xie, Hongguang;Zhu, Yongsheng;Lian, Lin;Luo, Xi;Xie, Huaan;Zhang, Jianfu;Wang, Yingheng;Zheng, Yanmei;Cai, Qiuhua;Liao, Changjian;Mao, Xiaohui;Xie, Hongguang;Zhu, Yongsheng;Lian, Lin;Luo, Xi;Xie, Huaan;Zhang, Jianfu;Wang, Yingheng;Zheng, Yanmei;Cai, Qiuhua;Liao, Changjian;Mao, Xiaohui;Xie, Hongguang;Zhu, Yongsheng;Lian, Lin;Luo, Xi;Xie, Huaan;Zhang, Jianfu;Wang, Yingheng;Zheng, Yanmei;Cai, Qiuhua;Mao, Xiaohui;Xie, Hongguang;Zhu, Yongsheng;Lian, Lin;Luo, Xi;Xie, Huaan;Zhang, Jianfu

作者机构：

关键词： Rice primal parental lines;Indica-japonica property;Rice yield;Grain quality;Population structure;Association analysis

期刊名称：EUPHYTICA （ 影响因子：1.895； 五年影响因子：2.181 ）

ISSN：

年卷期：

页码：

收录情况： SCI

摘要： To make advances in rice molecular design breeding, it is important to understand the genetic background and phenotypes of the parental lines, to known superior allele of the breeding material. In this study, 34 pairs of insertion-deletion (InDel) markers were used to analyze the differentiation of indica-japonica properties in 277 primal parental lines of hybrid rice that are used in China and abroad. The genetic diversity and population structure were assessed with simple sequence repeat (SSR) markers. We also evaluated the association between SSR markers and seven yield traits and four grain-quality traits of 256 indica rice lines. The main results are as follows. (1) Within the 277 lines there were two subgroups: indica and japonica. The 256 lines of the indica-subgroup were further divided into four sub-sub-groups: landrace, maintainer, restorer, and rice lines from the International Rice Research Institute. (2) We identified 29 loci associated with 11 agronomic traits, including one for plant height, two for tiller number, one for panicle length, three for grain length, eight for grain width, eight for grain length/width ratio, one for thousand grain weight, one for amylose content, two for gel consistency, one for gelatinization temperature and one for total protein content. (3) Among those loci, 16 markers were closely linked to previously identified genes. Superior allele carrier lines and allele effects were also analyzed. Our results provided the population structure and indica-japonica properties for parent matching, and the marker-trait association will also be useful for molecular design breeding.

分类号： S3

  • 相关文献

[1]Allelic diversities in rice starch biosynthesis lead to a diverse array of rice eating and cooking qualities. Yu, Jianming,Tian, Zhixi,Liu, Xinfang,Liu, Guifu,Wang, Yonghong,Li, Jiayang,Tian, Zhixi,Liu, Xinfang,Liu, Guifu,Wang, Yonghong,Li, Jiayang,Qian, Qian,Yan, Meixian,Gao, Zhenyu,Zeng, Dali,Liu, Qiaoquan,Yan, Changjie,Tang, Shuzhu,Gu, Minghong.

[2]Association Analysis in Rice: From Application to Utilization. Zhang, Peng,Zhong, Kaizhen,Tong, Hanhua,Shahid, Muhammad Qasim. 2016

[3]Satellite Remote Sensing Experiment That Evaluates Rotational Effect of Rice in Bean-Rice Rotation. Sun, Ling,Zhu, Zesheng. 2016

[4]Rice yield, potassium uptake and apparent balance under long-term fertilization in rice-based cropping systems in southern China. Zhang, Huimin,Xu, Minggang,Shi, Xiaojun,Li, Zuzhang,Huang, Qinghai,Wang, Xiujun.

[5]Geographical Variation of Climate Change Impact on Rice Yield in the Rice-Cropping Areas of Northeast China during 1980-2008. Liu, Zhenhuan,Zhang, Guojie,Yang, Peng. 2016

[6]Impact of temperature changes on early-rice productivity in a subtropical environment of China. Huang, Min,Jiang, Ligeng,Zhang, Weixing,Zou, Yingbin,Zou, Yingbin. 2013

[7]Influence of the Improved System of Rice Intensification (SRI) on Rice Yield, Yield Components and Tillering Characteristics under Different Rice Establishment Methods. Chen, Song,Wang, Dangying,Xu, Chunmei,Zhang, Xiufu,Zheng, Xi.

[8]A simple assessment on spatial variability of rice yield and selected soil chemical properties of paddy fields in South China. Liu, Zhanjun,Zhou, Wei,He, Ping,Lei, Qiuliang,Liang, Guoqing,Liu, Zhanjun,Shen, Jianbo.

[9]Effects of common Echinochloa varieties on grain yield and grain quality of rice. Gu, Tao,Yang, Xia,Li, Yongfeng,Zhao, Buhong,Peng, Qiong,Bai, Lianyang.

[10]Thiamethoxam seed treatment for control of rice thrips (Chloethrips oryzae) and its effects on the growth and yield of rice (Oryza sativa). Liu, Xueyuan,Wang, Pei,Fu, Wei,Ma, Mingyong.

[11]Winter legumes in rice crop rotations reduces nitrogen loss, and improves rice yield and soil nitrogen supply. Yu, Yingliang,Xue, Lihong,Yang, Linzhang.

[12]Development of elite restoring lines by integrating blast resistance and low amylose content using MAS. Xiao Wu-ming,Peng Xin,Luo Li-xin,Liang Ke-qin,Wang Jia-feng,Huang Ming,Liu Yong-zhu,Guo Tao,Luo Wen-long,Wang Hui,Chen Zhi-qiang,Yang Qi-yun,Zhu Xiao-yuan. 2018

[13]Suppression of OsMADS7 in rice endosperm stabilizes amylose content under high temperature stress. Zhang, Hua,Xu, Heng,Feng, Mengjie,Zhu, Ying. 2018

[14]Monitoring quality of winter wheat based on the HJ satellite images. Wang Yan,Li Cunjun. 2012

[15]Physiological Basis of Improved Performance of Super Rice (Oryza sativa) to Deep Placed Fertilizer with Precision Hill-drilling Machine. Kargbo, M. B.,Pan, Shenggang,Mo, Zhaowen,Tian, Hua,Hossain, Md. Faruque,Ashraf, Umair,Tang, Xiangru,Pan, Shenggang,Mo, Zhaowen,Tian, Hua,Ashraf, Umair,Tang, Xiangru,Kargbo, M. B.,Wang, Zaiman,Luo, Xiwen. 2016

[16]Influences of the disease resistance conferred by the individual transgenes, Pi-d2, Pi-d3 and Xa21, on the transgenic rice plants in yield and grain quality. Hao, Z. N.,Wang, L. P.,Tao, R. X.,Wang, J.,Wang, J.. 2009

[17]Long-term Effect of Year-Round Tillage Patterns on Yield and Grain Quality of Wheat. Wu, Xiaoli,Li, Chaosu,Wu, Chun,Ma, Xiaoling,Huang, Gang,Tang, Yonglu,Wu, Xiaoli,Li, Chaosu.

[18]Effects of short-term high temperature on grain quality and starch granules of rice (Oryza sativa L.) at post-anthesis stage. Chen, Jianlin,Tang, Liang,Shi, Peihua,Yang, Baohua,Sun, Ting,Cao, Weixing,Zhu, Yan,Chen, Jianlin.

[19]Map-based cloning proves qGC-6, a major QTL for gel consistency of japonica/indica cross, responds by Waxy in rice (Oryza sativa L.). Su, Yan,Rao, Yuchun,Hu, Shikai,Yang, Yaolong,Gao, Zhenyu,Zhang, Guanghen,Liu, Jian,Hu, Jiang,Yan, Meixian,Dong, Guojun,Zhu, Li,Guo, Longbiao,Qian, Qian,Zeng, Dali.

[20]Du1, encoding a novel Prp1 protein, regulates starch biosynthesis through affecting the splicing of Wx(b) supercript stop pre-mRNAs in rice (Oryza sativa L.). Zeng, Dali,Yan, Meixian,Wang, Yonghong,Liu, Xinfang,Qian, Qian,Li, Jiayang.

作者其他论文 更多>>

微信小程序