Annotated draft genome sequences of three species of Cryptosporidium: Cryptosporidium meleagridis isolate UKMEL1, C. baileyi isolate TAMU-09Q1 and C. hominis isolates TU502 2012 and UKH1
文献类型: 外文期刊
第一作者: Ifeonu, Olukemi O.
作者: Ifeonu, Olukemi O.;Chibucos, Marcus C.;Orvis, Joshua;Su, Qi;Fraser, Claire M.;Silva, Joana C.;Elwin, Kristin;Chalmers, Rachel M.;Guo, Fengguang;Zhang, Haili;Zhu, Guan;Xiao, Lihua;Sun, Mingfei;Kissinger, Jessica C.;Kissinger, Jessica C.;Widmer, Giovanni;Silva, Joana C.
作者机构:
关键词: Cryptosporidium;C. hominis TU502_2012;Cryptosporidium meleagridis;Cryptosporidium baileyi;genome assembly;annotation
期刊名称:PATHOGENS AND DISEASE ( 影响因子:3.166; 五年影响因子:3.081 )
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收录情况: SCI
摘要: Human cryptosporidiosis is caused primarily by Cryptosporidium hominis, C. parvum and C. meleagridis. To accelerate research on parasites in the genus Cryptosporidium, we generated annotated, draft genome sequences of human C. hominis isolates TU502_2012 and UKH1, C. meleagridis UKMEL1, also isolated from a human patient, and the avian parasite C. baileyi TAMU-09Q1. The annotation of the genome sequences relied in part on RNAseq data generated from the oocyst stage of both C. hominis and C. baileyi. The genome assembly of C. hominis is significantly more complete and less fragmented than that available previously, which enabled the generation of a much-improved gene set for this species, with an increase in average gene length of 500 bp relative to the protein-encoding genes in the 2004 C. hominis annotation. Our results reveal that the genomes of C. hominis and C. parvum are very similar in both gene density and average gene length. These data should prove a valuable resource for the Cryptosporidium research community.The release of the draft genome sequence, and corresponding annotation, of Cryptosporidium baileyi, C. hominis isolates TU502_2012 and UKH1, and C. meleagridis, will accelerate research on Cryptosporidium parasites.The release of the draft genome sequence, and corresponding annotation, of Cryptosporidium baileyi, C. hominis isolates TU502_2012 and UKH1, and C. meleagridis, will accelerate research on Cryptosporidium parasites.
分类号: R37
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