Mapping of Sihc1, which controls hull color, using a high-density genetic map based on restriction site-associated DNA sequencing in foxtail millet [Setaria italica (L.) P. Beauv.]

文献类型： 外文期刊

第一作者： Wang, Jun

作者： Wang, Jun;Yang, Huiqing;Wang, Zhilan;Du, Xiaofeng;Guo, Erhu;Yuan, Feng;Zhang, Linyi;Peng, Shuzhong;Du, Guohua;Zou, Hongfeng;Li, Yunfei;Peng, Jianxiang;Yong, Jianpeng;Cai, Wei;Xia, Qiuju;Yuan, Guobao;Ni, Xuemei;Du, Guohua;Zou, Hongfeng;Li, Yunfei;Peng, Jianxiang;Yong, Jianpeng;Cai, Wei;Xia, Qiuju;Yuan, Guobao;Ni, Xuemei;Han, Fang

作者机构：

关键词： Foxtail millet;RAD-seq;Genetic linkage map;Hull color;Sihc1

期刊名称：MOLECULAR BREEDING （ 影响因子：2.589； 五年影响因子：2.75 ）

ISSN：

年卷期：

页码：

收录情况： SCI

摘要： Hull color (HC) in foxtail millet appears to be a major indicator of nutritional quality. To attempt to identify and characterize the gene or quantitative trait locus (QTL) related to HC and to provide a basis for quality and yield breeding of foxtail millet, a restriction site-associated DNA sequencing (RAD-seq) analysis was employed to reveal genome-wide single nucleotide polymorphisms (SNPs) and to genotype the F-2 progeny from a cross between two cultivars: Heizhigu with green HC and Changnong 35 with yellow HC. A high-density linkage map spanning 1542.87 cM was constructed using 1694 bin markers, consisting of 46,256 SNP markers, and a QTL locus controlling HC was identified and temporarily named as Sihc1 (Setaria italica hull color). Results showed that Sihc1 was located in the interval between markers M33926512 and M34281352 on the end of chromosome 6, and explained 80.26% of the phenotypic variation with a logarithm of odds ratio of 93.46. The additive and dominant effects of Sihc1 were 1.0025 and -0.9991, respectively. Sihc1 was narrowed to a 354.84 kb physical region, inclusive of 30 open reading frames, and further analysis suggested that Seita. 6G226500, Seita. 6G226800, Seita. 6G228300, and Seita. 6G228600 might be the key candidates of Sihc1.

分类号： Q94

  • 相关文献

[1]Population genomic analyses from low-coverage RAD-Seq data: a case study on the non-model cucurbit bottle gourd. Xu, Pei,Wu, Xiaohua,Wang, Baogen,Wang, Sha,Lu, Zhongfu,Li, Guojing,Xu, Shizhong,Tao, Ye,Qin, Dehui. 2014

[2]Characterization of 19 polymorphic microsatellite markers for Asian yellow pond turtle (Mauremys mutica). Zhao, Jian,Wen, Ping,Li, Wei,Zhang, Dandan,Zhu, Xinping,Zhao, Jian,Wen, Ping.

[3]High-density genetic map construction and QTLs analysis of grain yield-related traits in Sesame (Sesamum indicum L.) based on RAD-Seq techonology. Wu, Kun,Liu, Hongyan,Yang, Minmin,Wu, Wenxiong,Zuo, Yang,Zhao, Yingzhong,Tao, Ye,Ma, Huihui. 2014

[4]Genetic analysis for rice grain quality traits in the YVB stable variant line using RAD-seq. Hu, Yuanyi,Mao, Bigang,Shao, Ye,Sheng, Xiabing,Li, Yaokui,Xia, Yumei,Yuan, Longping,Zhao, Bingran,Xiang, Haitao,Ni, Xuemei,Zhang, Gengyun,Quan, Zhiwu,Pan, Yinlin.

[5]Effects of components in culture medium on glutamate decarboxylase activity and gamma-aminobutyric acid accumulation in foxtail millet (Setaria italica L.) during germination. Bai, Qingyun,Gu, Zhenxin,Cao, Xiaohong,Li, Yan,Liu, Kunlun,Bai, Qingyun,Chai, Meiqing. 2009

[6]Foxtail Millet CBL4 (SiCBL4) Interacts with SiCIPK24, Modulates Plant Salt Stress Tolerance. Zhang, Yumin,Linghu, Jingjing,Wang, Dong,Liu, Xi,Li, Fengting,Zhao, Tianyong,Zhang, Yumin,Linghu, Jingjing,Wang, Dong,Liu, Xi,Li, Fengting,Zhao, Tianyong,Zhang, Yumin,Linghu, Jingjing,Wang, Dong,Liu, Xi,Li, Fengting,Zhao, Tianyong,Yu, Aili,Zhao, Jinfeng. 2017

[7]Determination of Protein, Fat, Starch, and Amino Acids in Foxtail Millet [Setaria italica (L.) Beauv.] by Fourier Transform Near-Infrared Reflectance Spectroscopy. Yang, Xiu-Shi,Dong, Chuan,Yang, Xiu-Shi,Wang, Li-Li,Zhou, Xian-Rong,Zhu, Zhi-Hua,Li, Nan,Li, Yan,Liu, Fang,Liu, San-Cai,Lu, Ping,Ren, Gui-Xing,Wang, Li-Li,Shuang, Shao-Min. 2013

[8]Intraspecific and interspecific variation in Setaria revealed by RAPD analysis. Li, Y,Jia, JZ,Wang, Y,Wu, SZ. 1998

[9]Development of EST-SSR in foxtail millet (Setaria italica). Jia, Xiao-Ping,Shi, Yun-Su,Song, Yan-Cun,Wang, Guo-Ying,Wang, Tian-Yu,Li, Yu. 2007

[10]CLONING AND SEQUENCE ANALYSIS OF A PUTATIVE CCT-MOTIF GENE IN TEN FOXTAIL MILLET CULTIVARS. Jia, X. P.,Fan, B. Y.,Zhang, G. N.,Shi, G. A.,Hou, D. Y.,Bai, J. Y.,Quan, J. Z.,Dong, Z. P.. 2016

[11]Illumina sequencing reveals a rhizosphere bacterial community associated with foxtail millet smut disease suppression. Han, Yansha,Xu, Lixia,Liu, Liqing,Yi, Min,Yi, Huilan,Guo, Erhu,Zhang, Aiying.

[12]Bioinformatic analysis of the nucleotide binding site-encoding disease-resistance genes in foxtail millet (Setaria italica (L.) Beauv.). Zhu, Y. B.,Dong, J. G.,Zhu, Y. B.,Li, Z. Y.,Bai, H.,Dong, L.,Dong, Z. P.,Xie, X. Q.. 2014

[13]DEVELOPMENT OF STS MARKERS FOR WAXY GENE ALLELIC VARIATION IDENTIFICATION IN FOXTAIL MILLET. Jia, X. P.,Dong, P. H.,Yu, F. Y.,Quan, J. Z.,Bai, H.,Dong, Z. P.. 2015

[14]In vitro starch digestibility, degree of gelatinization and estimated glycemic index of foxtail millet-derived products: Effect of freezing and frozen storage. Ren, Xin,Chen, Jing,Wang, Chao,Molla, Mohammad Mainuddin,Shen, Qun,Diao, Xianmin.

[15]Cloning and characterization of a putative 12-oxophytodienoic acid reductase cDNA induced by osmotic stress in roots of foxtail millet. Zhang, Jin-Peng,Liu, Ting-Song,Zheng, Jun,Jin, Zheng,Zhu, Yun,Guo, Jiu-Feng,Wang, Guo-Ying.

[16]Genome-wide investigation and expression analyses of the pentatricopeptide repeat protein gene family in foxtail millet. Liu, Jia-Ming,Xu, Zhao-Shi,Lu, Pan-Pan,Li, Wei-Wei,Chen, Ming,Ma, You-Zhi,Liu, Jia-Ming,Li, Wei-Wei,Guo, Chang-Hong. 2016

[17]Combined small RNA and degradome sequencing to identify miRNAs and their targets in response to drought in foxtail millet. Wang, Yongqiang,Li, Lin,Diao, Xianmin,Tang, Sha,Zhi, Hui,Jia, Guanqing,Diao, Xianmin,Wang, Yongqiang,Liu, Jianguang,Zhang, Hanshuang. 2016

[18]Determination of protein, total carbohydrates and crude fat contents of foxtail millet using effective wavelengths in NIR spectroscopy. Chen, Jing,Ren, Xin,Zhang, Qing,Shen, Qun,Chen, Jing,Ren, Xin,Zhang, Qing,Shen, Qun,Diao, Xianmin. 2013

[19]Genetic Diversity and Population Structure of Chinese Foxtail Millet [Setaria italica (L.) Beauv.] Landraces. Wang, Chunfang,Jia, Guanqing,Zhi, Hui,Niu, Zhengang,Chai, Yang,Lu, Ping,Diao, Xianmin,Wang, Chunfang,Zhao, Baohua,Wang, Chunfang. 2012

[20]Genetic variation of yellow pigment and its components in foxtail millet (&ITSetaria&IT &ITitalica &IT(L.) P. Beauv.) from different eco-regions in China. Yang Yan-bing,Yin Yan-ping,Yang Yan-bing,Qin Ling,Chen Er-ying,Wang Hai-lian,Zhang Hua-wen,Liu Bin,Guan Yan-an,Jia Guan-qing,Diao Xian-min,Deng Li-gang,Cong Xin-jun,Zou Ren-feng. 2017

作者其他论文 更多>>

微信小程序