Karyotypes and Distribution of Tandem Repeat Sequences in Brassica nigra Determined by Fluorescence in situ Hybridization

文献类型： 外文期刊

第一作者： Wang, Gui-xiang

作者： Wang, Gui-xiang;Zhao, Hong;Guo, Ning;Han, Shuo;Zong, Mei;Liu, Fan;He, Qun-yan;Meng, De-xuan;Jin, Wei-wei;Macas, Jiri;Novak, Petr;Neumann, Pavel

作者机构：

关键词： Brassica nigra;Fluorescence in situ hybridization;Karyotype;(Peri) centromere;Repeat sequence

期刊名称：CYTOGENETIC AND GENOME RESEARCH （ 影响因子：1.636； 五年影响因子：1.943 ）

ISSN：

年卷期：

页码：

收录情况： SCI

摘要： Whole-genome shotgun reads were analyzed to determine the repeat sequence composition in the genome of black mustard, Brassica nigra (L.) Koch. The analysis showed that satellite DNA sequences are very abundant in the black mustard genome. The distribution pattern of 7 new tandem repeats (BnSAT13, BnSAT28, BnSAT68, BnSAT76, BnSAT114, BnSAT180, and BnSAT200) on black mustard chromosomes was visualized using fluorescence in situ hybridization (FISH). The FISH signals of BnSAT13 and BnSAT76 provided useful cytogenetic markers; their position and fluorescence intensity allowed for unambiguous identification of all 8 somatic metaphase chromosomes. A karyotype showing the location and fluorescence intensity of these tandem repeat sequences together with the position of rDNAs and centromeric retrotransposons of Brassica (CRB) was constructed. The establishment of the FISH-based karyotype in B. nigra provides valuable information that can be used in detailed analyses of B. nigra accessions and derived allopolyploid Brassica species containing the B genome. (C) 2017 S. Karger AG, Basel

分类号： Q1

  • 相关文献

[1]Progress in the studies of foreign gene silencing in transgenic plants.. Zhu, L,Zhang, CY,Fan, YL. 1999

[2]Production and characterization of interspecific somatic hybrids between Brassica oleracea var. botrytis and B. nigra and their progenies for the selection of advanced pre-breeding materials. Wang, Gui-xiang,Tang, Yu,Sheng, Xiao-guang,Hao, Wei-wei,Zhang, Li,Lu, Kun,Liu, Fan,Yan, Hong. 2011

[3]Genetic and Epigenetic Alterations of Brassica nigra Introgression Lines from Somatic Hybridization: A Resource for Cauliflower Improvement. Wang, Gui-xiang,Lv, Jing,Zhang, Jie,Han, Shuo,Zong, Mei,Guo, Ning,Zeng, Xing-ying,Zhang, Yue-yun,Liu, Fan,Lv, Jing,Wang, You-ping,Lv, Jing. 2016

[4]Molecular cytogenetic identification of Triticum aestivum Secale cereale substitution and addition lines. Li, HJ,Zhu, ZQ,Zhang, YM,Guo, BH,Wen, YX,Jia, X. 1998

[5]Characterization of a wheat-wheatgrass translocation line by fish. Han, FP,He, MY,Bu, XL,Huang, BQ,Hao, S,Ma, YZ,Xin, ZY. 1998

[6]Molecular and Cytogenetic Characterization of New Wheat-Dasypyrum breviaristatum Derivatives with Post-Harvest Re-Growth Habit. Li, Guangrong,Li, Donghai,Gao, Dan,Zhang, Jie,Yang, Zujun,Yang, Ennian. 2015

[7]Molecular characterization of the soybean L-asparaginase gene induced by low temperature stress. Cho, Chang-Woo,Lee, Hye-Jeong,Chung, Eunsook,Kim, Kyoung Mi,Kim, Jee Eun Heo Jung-In,Chung, Jongil,Ma, Youzhi,Fukui, Kiichi,Lee, Dae-Won,Kim, Doh-Hoon,Chung, Young-Soo,Lee, Jai-Heou. 2007

[8]Characterization of genome and chromosomes in octoploid wheat-wheatgrass amphiploid Zhong 2 using fluorescence in situ hybridization and chromosome pairing analysis. Gao, Z,Han, FP,He, MY,Ma, YZ,Xin, ZY. 1999

[9]Screening and identification of a microsatellite marker associated with sex in Wami tilapia, Oreochromis urolepis hornorum. Zhu, Huaping,Liu, Zhigang,Lu, Maixin,Gao, Fengying,Ke, Xiaoli,Ma, Dongmei,Huang, Zhanghan,Cao, Jianmeng,Wang, Miao.

[10]Identification and Expression Patterns of Putative Diversified Carboxylesterases in the Tea Geometrid Ectropis obliqua Prout. Zhang, Yuxing,Tang, Meijun,Guo, Huawei,Fu, Jianyu,Xiao, Qiang,Sun, Liang,Wang, Qian,Wang, Qi,Zhang, Yongjun,Wang, Qian,Zhang, Yuxing,Zhang, Yanan. 2017

[11]Cytogenetic relationships among Citrullus species in comparison with some genera of the tribe Benincaseae (Cucurbitaceae) as inferred from rDNA distribution patterns. Li, Kun-Peng,Wu, Yun-Xiang,Wang, Yan,Lu, Xing-Ming,Li, Zong-Yun,Han, Yong-Hua,Zhao, Hong,Xu, Yong,Wang, Ji-Ming. 2016

[12]Variation of the wheatgrass chromosomes in wheat-wheatgrass disomic addition line TAI-14 revealed by fluorescence in situ hybridization. Han, FP,He, MY,Hao, S,Ma, YZ,Xin, ZY. 1998

[13]Study of the genomic constitution of the German mirror carp. Li, Ya-Juan,Liu, Bo,Zhou, He,Gao, Yang-Chun,Gao, Min,Wang, Yu-Sheng,Cao, Ding-Chen,Sun, Xiao-Wen.

[14]Detection of the rye chromatin in multispikelet wheat germplasm 10-A background using fluorescence in situ hybridization (FISH) and RFLP markers. Wei, YM,Zheng, YL,Zhou, RH,Jia, JZ. 1999

[15]Chromosome painting of telomeric repeats reveals new evidence for genome evolution in peanut. Du Pei,Qi Zeng-jun,Du Pei,Li Li-na,Zhang Zhong-xin,Liu Hua,Qin Li,Huang Bing-yan,Dong Wen-zhao,Tang Feng-shou,Zhang Xin-you,Li Li-na. 2016

[16]Comparative Oligo-FISH Mapping: An Efficient and Powerful Methodology To Reveal Karyotypic and Chromosomal Evolution. He, Li,Zhao, Hainan,Zhang, Tao,Jiang, Jiming,Braz, Guilherme T.,Torres, Giovana A.,He, Li,Zhang, Tao,Semrau, Kassandra,Rouillard, Jean-Marie,Rouillard, Jean-Marie,Jiang, Jiming,Jiang, Jiming. 2018

[17]Development and characterization of a cell line from the embryos of half smooth tongue sole (Cynoglossus semilaevis). Sha Zhenxia,Ren Guocheng,Wang Xianli,Wang Na,Chen Songlin,Ren Guocheng,Wang Xianli. 2010

[18]Establishment, characterization and virus susceptibility of a kidney-derived cell line from southern flounder, Paralichthys lethostigma Jordan & Gilbert. Wang, N.,Wang, X-L,Sha, Z-X,Tian, Y-S,Chen, S-L,Chen, S-L. 2011

[19]Chromosome Variation from Sect. Chinenses (Rosa L.) through Chinese Old Garden Roses to Modern Rose Cultivars. Jian, H. Y.,Min, T.,Ting, Z.,Li, S. B.,Zhang, H.,Tang, K. X.. 2013

[20]Distribution of the tandem repeat sequences and karyotyping in cucumber (Cucumis sativus L.) by fluorescence in situ hybridization. Han, Y. H.,Liu, J. H.,Lu, J. Y.,Jin, W. W.,Han, Y. H.,Zhang, Z. H.,Huang, S. W..

作者其他论文 更多>>

微信小程序