Molecular and geographic evolutionary support for the essential role of GIGANTEAa in soybean domestication of flowering time

文献类型： 外文期刊

第一作者： Wang, Yan

作者： Wang, Yan;Gu, Yongzhe;Gao, Huihui;He, Chaoying;Gu, Yongzhe;Gao, Huihui;Qiu, Lijuan;Chang, Ruzhen;Chen, Shouyi

作者机构：

关键词： Domestication;Evolution;Flowering time;GIGANTEA;Haplotype;Soybean

期刊名称：BMC EVOLUTIONARY BIOLOGY （ 影响因子：3.26； 五年影响因子：3.732 ）

ISSN： 1471-2148

年卷期： 2016 年 16 卷

页码：

收录情况： SCI

摘要： Background: Flowering time is a domestication trait of Glycine max and varies in soybeans, yet, a gene for flowering time variation has not been associated with soybean domestication. GIGANTEA (GI) is a major gene involved in the control of flowering time in Arabidopsis, although three GI homologs complicate this model in the soybean genome. Results: In the present work, we revealed that the geographic evolution of the GIGANTEAa (GIa) haplotypes in G. max (GmGIa) and Glycine soja (GsGIa). Three GIa haplotypes (H1, H2, and H3) were found among cultivated soybeans and their wild relatives, yet an additional 44 diverse haplotypes were observed in wild soybeans. H1 had a premature stop codon in the 10th exon, whereas the other haplotypes encoded full-length GIa protein isoforms. In both wild-type and cultivated soybeans, H2 was present in the Southern region of China, and H3 was restricted to areas near the Northeast region of China. H1 was genetically derived from H2, and it was dominant and widely distributed among cultivated soybeans, whereas in wild populations, the ortholog of this domesticated haplotype H1 was only found in Yellow River basin with a low frequency. Moreover, this mutated GIa haplotype significantly correlated with early flowering. We further determined that the differences in gene expression of the three GmGIa haplotypes were not correlated to flowering time variations in cultivated soybeans. However, only the truncated GmGIa H1 could partially rescue gi-2 Arabidopsis from delayed flowering in transgenic plants, whereas both GmGIa H2 and H3 haplotypes could significantly repress flowering in transgenic Arabidopsis with a wild-type background. Conclusions: Thus, GmGIa haplotype diversification may have contributed to flowering time adaptation that facilitated the radiation of domesticated soybeans. In light of the evolution of the GIa gene, soybean domestication history for an early flowering phenotype is discussed.

分类号：

  • 相关文献

[1]Genetic diversity within Oryza rufipogon germplasms preserved in Chinese field gene banks of wild rice as revealed by microsatellite markers. Zhang, Chi-Hong,Li, Dao-Yuan,Pan, Da-Jian,Jia, Ji-Zeng,Dong, Yu-Shen.

[2]Nonfunctional alleles of long-day suppressor genes independently regulate flowering time. Zheng, Xiao-Ming,Wang, Junrui,Qiao, Weihua,Zhang, Lifang,Cheng, Yunlian,Yang, Qingwen,Feng, Li. 2016

[3]DNA methylation polymorphism in annual wild soybean (Glycine soja Sieb. et Zucc.) and cultivated soybean (G. max L. Merr.). Zhong, Xiaofang,Gong, Lei,Ma, Yan,Qi, Bao,Liu, Bao,Wang, Yumin,Liu, Xiaodong,Dong, Yingshan. 2009

[4]A preliminary study on population genetic structure and phylogeography of the wild and cultivated Zizania latifolia (Poaceae) based on Adh1a sequences. Xu, Xin-wei,Ge, Song,Xu, Xin-wei,Ke, Wei-dong,Yu, Xiao-ping,Wen, Jun,Ge, Song.

[5]Genome-wide identification and evolutionary analysis of positively selected miRNA genes in domesticated rice. Liu, Qingpo,Wang, Hong,Hu, Haichao,Liu, Qingpo,Wang, Hong,Hu, Haichao,Zhang, Hengmu.

[6]Genetic diversity of the azuki bean (Vigna angularis (Willd.) Ohwi & Ohashi) gene pool as assessed by SSR markers. Tomooka, N.,Kaga, A.,Isemura, T.,Vaughan, D. A.,Xu, H. X.,Jing, T..

[7]R2R3-MYB gene pairs in Populus: evolution and contribution to secondary wall formation and flowering time. Chai, Guohua,Wang, Zengguang,Tang, Xianfeng,Yu, Li,Qi, Guang,Wang, Dian,Yan, Xiaofei,Zhou, Gongke,Kong, Yingzhen.

[8]The heterogeneity of the rDNA-ITS sequence and its phylogeny in Rhizoctonia cerealis, the cause of sharp eyespot in wheat. Li, Wei,Sun, Haiyan,Deng, Yuanyu,Zhang, Aixiang,Chen, Huaigu.

[9]Differential expression of a WRKY gene between wild and cultivated soybeans correlates to seed size. Gu, Yongzhe,Wang, Yan,Gao, Huihui,He, Chaoying,Gu, Yongzhe,Gao, Huihui,He, Chaoying,Li, Wei,Liu, Miao,Lai, Yongcai,Jiang, Hongwei,Chen, Qingshan.

[10]A CIB1-LIKE transcription factor GmCIL10 from soybean positively regulates plant flowering. Yang DeGuang,Zhao Wang,Meng YingYing,Li HongYu,Liu Bin. 2015

[11]QTL effects and epistatic interaction for flowering time and branch number in a soybean mapping population of JapanesexChinese cultivars. Yang Guang,Xie Fu-ti,Zhai Hong,Wu Hong-yan,Zhang Xing-zheng,Wang Ya-ying,Li Yu-qiu,Hu Bo,Wang Lu,Xia Zheng-jun,Zhang Xing-zheng,Wang Ya-ying,Li Yu-qiu,Wang Lu,Yang Guang,Lu Shi-xiang,Wen Zi-xiang,Wang De-chun,Wang Shao-dong,Harada, Kyuya. 2017

[12]Identification of photoperiod-regulated gene in soybean and functional analysis in Nicotiana benthamiana. Sha Ai-Hua,Shan Zhi-Hui,Zhang Xiao-Juan,Wu Xue-Jun,Qiu De-Zheng,Zhou Xin-An,Chen Yin-Hua,Sha Ai-Hua,Shan Zhi-Hui,Zhang Xiao-Juan,Wu Xue-Jun,Qiu De-Zheng,Zhou Xin-An.

[13]Molecular identification of genes controlling flowering time, maturity, and photoperiod response in soybean. Xia, Zhengjun,Zhai, Hong,Liu, Baohui,Kong, Fanjiang,Yuan, Xiaohui,Wu, Hongyan,Xia, Zhengjun,Cober, Elroy R.,Harada, Kyuya. 2012

[14]Evolution and expression analysis of the soybean glutamate decarboxylase gene family. Hyun, Tae Kyung,Eom, Seung Hee,Han, Xiao,Kim, Ju-Sung,Kim, Ju-Sung.

[15]In situ expression of the GmNMH7 gene is photoperiod-dependent in a unique soybean (Glycine max [L.] Merr.) flowering reversion system. Wu, CX,Ma, QB,Yam, KM,Cheung, MY,Xu, YY,Han, TF,Lam, HM,Chong, K.

[16]Concerted evolution of D1 and D2 to regulate chlorophyll degradation in soybean. Li, Congcong,Li, Weiyu,Wang, Zheng,Zhou, Zhengkui,Shen, Yanting,Wu, Mian,Wu, Yunshuai,Liu, Cuimin,Tian, Zhixi,Fang, Chao,Li, Congcong,Shen, Yanting,Li, Guiquan,Kong, Ling-An,Jackson, Scott A.. 2014

[17]Molecular footprints of domestication and improvement in soybean revealed by whole genome re-sequencing. Li, Ying-hui,Yan, Long,Qi, Xiao-tian,Zhang, Le,Chang, Ru-zhen,Guo, Yong,Wang, Xiao-bo,Guan, Rong-xia,Liu, Yu-lin,Jin, Long-guo,Liu, Zhang-xiong,Zhang, Li-juan,Wang, Ke-jing,Qiu, Li-juan,Zhao, Shan-cen,Li, Dong,Li, Jun,Guo, Xiao-sen,He, Wei-ming,Liang, Qin-si,Ye, Chen,Tao, Yong,Wang, Jun-yi,Zhang, Xiu-qing,Chen, Jie,Nielsen, Rasmus,Li, Rui-qiang,Wang, Jian,Wang, Jun,Ma, Jian-xin,Yan, Long,Zhang, Meng-chen,Tao, Yong,Nielsen, Rasmus,Wang, Jun,Wang, Jun-yi,Nielsen, Rasmus,Nielsen, Rasmus,Chen, Peng-yin,Li, Wen-bin,Reif, Jochen C.,Purugganan, Michael,Purugganan, Michael. 2013

[18]The phytochrome gene family in soybean and a dominant negative effect of a soybean PHYA transgene on endogenous Arabidopsis PHYA. Wu, Fa-Qiang,Fan, Cheng-Ming,Zhang, Xiao-Mei,Fu, Yong-Fu. 2013

[19]Cloning and characterization of a novel GIGANTEA gene in sweet potato. Tang, Wei,Yan, Hui,Su, Zai-xing,Park, Sung-Chul,Liu, Ya-ju,Zhang, Yun-gang,Wang, Xin,Kou, Meng,Ma, Dai-fu,Li, Qiang,Park, Sung-Chul,Kwak, Sang-Soo. 2017

[20]Genomic insights into divergence and dual domestication of cultivated allotetraploid cottons. Lei Fang,Hao Gong,Yan Hu,Chunxiao Liu,Huang, Xuehui,Zhang, Tianzhen,Baoliang Zhou,Tao Huang,Yangkun Wang,Shuqi Chen,David D. Fang,Xiongming Du,Hong Chen,Jiedan Chen,Sen Wang,Qiong Wang,Qun Wan,Bingliang Liu,Mengqiao Pan,Lijing Chang,Huaitong Wu,Gaofu Mei,Dan Xiang,Xinghe Li,Caiping Cai,Xiefei Zhu,Z. Jeffrey Chen,Bin Han,Xiaoya Chen,Wangzhen Guo,Tianzhen Zhang,Xuehui Huang. 2017

作者其他论文 更多>>

微信小程序