Genetic Diversity and Population Structure of Broomcorn Millet (Panicum miliaceum L.) Cultivars and Landraces in China Based on Microsatellite Markers

文献类型： 外文期刊

第一作者： Liu, Minxuan

作者： Liu, Minxuan;Zhang, Shuang;Wang, Yinyue;Lu, Ping;Xu, Yue;He, Jihong;Wang, Yinyue

作者机构：

关键词： Panicum miliaceum L. varieties;SSR markers;genetic diversity;population structure

期刊名称：INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES （ 影响因子：5.923； 五年影响因子：6.132 ）

ISSN： 1422-0067

年卷期： 2016 年 17 卷 3 期

页码：

收录情况： SCI

摘要： Broomcorn millet (Panicum miliaceum L.), one of the first domesticated crops, has been grown in Northern China for at least 10,000 years. The species is presently a minor crop, and evaluation of its genetic diversity has been very limited. In this study, we analyzed the genetic diversity of 88 accessions of broomcorn millet collected from various provinces of China. Amplification with 67 simple sequence repeat (SSR) primers revealed moderate levels of diversity in the investigated accessions. A total of 179 alleles were detected, with an average of 2.7 alleles per locus. Polymorphism information content and expected heterozygosity ranged from 0.043 to 0.729 (mean = 0.376) and 0.045 to 0.771 (mean = 0.445), respectively. Cluster analysis based on the unweighted pair group method of mathematical averages separated the 88 accessions into four groups at a genetic similarity level of 0.633. A genetic structure assay indicated a close correlation between geographical regions and genetic diversity. The uncovered information will be valuable for defining gene pools and developing breeding programs for broomcorn millet. Furthermore, the millet-specific SSR markers developed in this study should serve as useful tools for assessment of genetic diversity and elucidation of population structure in broomcorn millet.

分类号：

  • 相关文献

[1]Evaluation of the genetic diversity of Asian peach accessions using a selected set of SSR markers. Xie, Rangjin,Li, Xiongwei,Chai, Mingliang,Song, Lijuan,Jia, Huijuan,Gao, Zhongshan,Wu, Dajun,Chen, Miaojin,Chen, Keming,Jose Aranzana, Maria,Xie, Rangjin.

[2]Association between Chloroplast and Mitochondrial DNA sequences in Chinese Prunus genotypes (Prunus persica, Prunus domestica, and Prunus avium). Pervaiz, Tariq,Sun, Xin,Zhang, Yanyi,Tao, Ran,Fang, Jinggui,Zhang, Junhuan. 2015

[3]Genetic diversity analysis of barley landraces and cultivars in the Shanghai region of China. Chen, Z. -W.,Lu, R. -J.,Zou, L.,Du, Z. -Z.,Gao, R. -H.,He, T.,Huang, J. -H.,Chen, Z. -W.,Lu, R. -J.,Zou, L.,Du, Z. -Z.,Gao, R. -H.,He, T.,Huang, J. -H.. 2012

[4]Genetic differentiation and diversity of phenotypic characters in Chinese wild soybean (Glycine soja Sieb. et Zucc.) revealed by nuclear SSR markers and the implication for intraspecies phylogenic relationship of characters. Wang, Ke-Jing,Li, Xiang-Hua.

[5]A core collection and mini core collection of Oryza sativa L. in China. Zhang, Hongliang,Zhang, Dongling,Wang, Meixing,Sun, Junli,Qi, Yongwen,Li, Jinjie,Li, Zichao,Wei, Xinghua,Tang, Shengxiang,Han, Longzhi,Qiu, Zongen.

[6]Genetic diversity in parent lines of sweet sorghum based on agronomical traits and SSR markers. Wang, Liming,Yan, Xiufeng,Wang, Liming,Jiao, Shaojie,Jiang, Yanxi,Yan, Hongdong,Su, Defeng,Sun, Guangquan,Sun, Lianfa. 2013

[7]Genetic Diversity in Various Accessions of Pineapple [Ananas comosus (L.) Merr.] Using ISSR and SSR Markers. He, Jun-hu,Chen, Hua-rui,Chen, Ye-yuan,Qiao, Fei,Wang, Jian-sheng. 2017

[8]The microsatellites and minisatellites in the genome of Fenneropenaeus chinensis. Gao, H,Kong, J.

[9]SSR heterogenic patterns of parents for marking and predicting heterosis in rice breeding. Liu, XC,Wu, JL. 1998

[10]The genetic diversity of Gaozhou wild rice analyzed by SSR. Li, C,Pan, DJ,Mao, XX,Tu, CY,Zhou, HQ,Fan, ZL,Li, XF.

[11]Association mapping of yield-related traits and SSR markers in wild soybean (Glycine sofa Sieb. and Zucc.). Hu, Zhenbin,Zhang, Dan,Zhang, Guozheng,Kan, Guizhen,Hong, Delin,Yu, Deyue,Hu, Zhenbin,Zhang, Dan. 2014

[12]Analysis of genetic diversity and population structure in a tomato (Solanum lycopersicum L.) germplasm collection based on single nucleotide polymorphism markers. Wang, T.,Wang, T.,Zou, Q. D.,Qi, S. Y.,Wang, X. F.,Wu, Y. Y.,Zhang, Y. M.,Zhang, Z. J.,Li, H. T.,Liu, N.. 2016

[13]Mitochondrial DNA reveals low population differentiation in elongate loach, Leptobotia elongata (Bleeker): implications for conservation. Zhou, Dinggang,Liu, Guangxun,Zhou, Jian. 2012

[14]Genetic Diversity and Structure of Lolium Species Surveyed on Nuclear Simple Sequence Repeat and Cytoplasmic Markers. Cai, Hongwei,Guan, Xuanli,Cai, Hongwei,Guan, Xuanli,Cai, Hongwei,Yuyama, Nana,Cai, Hongwei,Stewart, Alan,Ding, Chenglong,Xu, Nengxiang,Kiyoshi, Takako. 2017

[15]Genetic variation and population structure of the oriental fruit moth Grapholita molesta in Shanxi, a major pome fruits growing region in North China. Yang, Jing,Liu, Zhong-Fang,Fan, Ji-Qiao,Fan, Ren-Jun,Yang, Jing,Liu, Zhong-Fang,Fan, Ji-Qiao,Fan, Ren-Jun,Wu, Yu-Peng,Ma, Rui-Yan. 2016

[16]Genetic diversity and population structure of cultivated bromeliad accessions assessed by SRAP markers. Zhang, Fei,Ge, Yaying,Wang, Weiyong,Shen, Xiaolan,Liu, Xiaojing,Liu, Jianxin,Tian, Danqing,Yu, Xinying. 2012

[17]Genetic diversity and population structure of ginseng in China based on RAPD analysis. Zhao, Yan,Xu, Yong-hua,Zhang, Lian-xue,Wang, Shi-jie,Han, Feng-bo,Li, Ru-sheng,Chen, Xiao-lin,Wang, Shi-jie,Li, Gang. 2016

[18]Genetic diversity and population structure of Lamiophlomis rotata (Lamiaceae), an endemic species of Qinghai-Tibet Plateau. Liu, Jimei,Wang, Li,Geng, Yupeng,Wang, Qingbiao,Luo, Lijun,Zhong, Yang. 2006

[19]Analysis of Genetic Diversity and Population Structure of Maize Landraces from the South Maize Region of China. Liu Zhi-zhai,Guo Rong-hua,Wang Rong-huan,Shi Yun-su,Song Yan-chun,Wang Tian-yu,Li Yu,Liu Zhi-zhai,Cai Yi-lin,Guo Rong-hua,Cao Mo-ju,Zhao Jiu-ran,Wang Feng-ge,Wang Rong-huan. 2010

[20]Development of Cymbidium ensifolium genic-SSR markers and their utility in genetic diversity and population structure analysis in cymbidiums. Li, Xiaobai,Jin, Liang,Jin, Feng,Jackson, Aaron,Huang, Cheng,Li, Kehu,Shu, Xiaoli. 2014

作者其他论文 更多>>

微信小程序