High-Density Linkage Map Construction and Mapping of Salt-Tolerant QTLs at Seedling Stage in Upland Cotton Using Genotyping by Sequencing (GBS)

文献类型： 外文期刊

第一作者： Latyr Diouf

作者： Latyr Diouf;Du, Xiongming;Zhaoe Pan;Shou-Pu He;Wen-Fang Gong;Yin Hua Jia;Richard Odongo Magwanga;Kimbembe Romesh Eric Romy;Harun or Rashid;Joy Nyangasi Kirungu;Xiongming Du

作者机构：

关键词： upland cotton;high-density;salinity tolerance;QTL mapping;GBS

期刊名称：INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES （ 影响因子：5.923； 五年影响因子：6.132 ）

ISSN： 1422-0067

年卷期： 2017 年 18 卷 12 期

页码：

收录情况： SCI

摘要： Over 6% of agricultural land is affected by salinity. It is becoming obligatory to use saline soils, so growing salt-tolerant plants is a priority. To gain an understanding of the genetic basis of upland cotton tolerance to salinity at seedling stage, an intra-specific cross was developed from CCRI35, tolerant to salinity, as female with Nan Dan (NH), sensitive to salinity, as the male. A genetic map of 5178 SNP markers was developed from 277 F-2:3 populations. The map spanned 4768.098 cM, with an average distance of 0.92 cM. A total of 66 QTLs for 10 traits related to salinity were detected in three environments (0, 110, and 150 mM salt treatment). Only 14 QTLs were consistent, accounting for 2.72% to 9.87% of phenotypic variation. Parental contributions were found to be in the ratio of 3: 1, 10 QTLs from the sensitive and four QTLs from the resistant parent. Five QTLs were located in A(t) and nine QTLs in the Dt sub-genome. Moreover, eight clusters were identified, in which 12 putative key genes were found to be related to salinity. The GBS-SNPs-based genetic map developed is the first high-density genetic map that has the potential to provide deeper insights into upland cotton salinity tolerance. The 12 key genes found in this study could be used for QTL fine mapping and cloning for further studies.

分类号：

  • 相关文献

[1]Dynamic QTL mapping for plant height in Upland cotton (Gossypium hirsutum). Shang, Lianguang,Abduweli, Abdugheni,Cai, Shihu,Liu, Fang,Wang, Kunbo,Wang, Yumei.

[2]Genetic analysis and QTL mapping of oil content and seed index using two recombinant inbred lines and two backcross populations in Upland cotton. Shang, Lianguang,Abduweli, Abdugheni,Hua, Jinping,Wang, Yumei.

[3]Transcriptome profiling and digital gene expression analysis of Nile tilapia (Oreochromis niloticus) infected by Streptococcus agalactiae. Zhang, Rui,Zhang, Li-li,Ye, Xing,Tian, Yuan-yuan,Sun, Cheng-fei,Lu, Mai-xin,Bai, Jun-jie,Zhang, Rui.

[4]Genotyping by sequencing reveals a new locus for pig teat number. Wang, L.,Zhang, Y.,Zhang, T.,Zhang, L.,Yan, H.,Liu, X.,Wang, L..

[5]Optimized tillage practices and row spacing to improve grain yield and matter transport efficiency in intensive spring maize. Piao, Lin,Zhao, Ming,Piao, Lin,Li, Congfeng,Zhao, Ming,Qi, Hua.

[6]Construction of a high-density genetic map for sesame based on large scale marker development by specific length amplified fragment (SLAF) sequencing. Zhang, Yanxin,Wang, Linhai,Li, Donghua,Ding, Xia,Zhang, Xiurong,Xin, Huaigen,Ma, Chouxian,Hong, Weiguo. 2013

[7]Construction of a high-density genetic map for watermelon (Citrullus lanatus L.) based on large-scale SNP discovery by specific length amplified fragment sequencing (SLAF-seq). Shang, Jianli,Li, Na,Li, Nannan,Xu, Yongyang,Ma, Shuangwu,Wang, Jiming.

[8]Genetic improvement of cotton tolerance to salinity stress. Ma, Xinrong,Dong, Hezhong,Li, Weijiang,Ma, Xinrong. 2011

[9]Differential expression of salt tolerance related genes in Brassica campestris L. ssp chinensis (L.) Makino var. communis Tsen et Lee. Qiu, Yang,Li, Xi-xiang,Zhi, Hai-ying,Shen, Di,Lu, Peng. 2009

[10]Effect of Salt Stress on Growth and Physiology in Melia azedarach Seedlings of Six Provenances. Xu, Liping,Xu, Liping,Zhang, Zihan,Yu, Fangyuan,Guo, Jie,Liu, Jianbin,Yue, Haiwang. 2018

[11]Natural variation of salinity response, population structure and candidate genes associated with salinity tolerance in perennial ryegrass accessions. Tang, Jinchi,Yu, Xiaoqing,Camberato, James J.,Jiang, Yiwei,Luo, Na,Xiao, Fangming. 2013

[12]Enhancement of Salinity Tolerance during Rice Seed Germination by Presoaking with Hemoglobin. Xu, Sheng,Hu, Bing,He, Ziyi,Ma, Fei,Feng, Jianfei,Shen, Wenbiao,Yang, Jie. 2011

[13]Genome-wide association study of seedling stage salinity tolerance in temperate japonica rice germplasm. Batayeva, Dariga,Dyuskalieva, Gulzhamal,Labaco, Benedick,Ye, Changrong,Vergara, Georgina,Reinke, Russell,Leung, Hei,Ye, Changrong,Li, Xiaolin,Usenbekov, Bakdaulet,Rysbekova, Aiman. 2018

[14]Applying a salinity response function and zoning saline land for three field crops: a case study in the Hetao Irrigation District, Inner Mongolia, China. Tong Wen-jie,Wen Xin-ya,Chen Fu,Zhang Hai-lin,Chu Qing-quan,Dikgwatlhe, Shadrack Batsile,Chen Xiao-li. 2015

[15]Larval development and salinity tolerance of Japanese flounder (Paralichthys olivaceus) from hatching to juvenile settlement. Wang, Youji,Guo, Qindan,Zhao, Hu,Lu, Weiqun,Liu, Haijin.

[16]Salinity tolerance as well as osmotic and ionic regulation in juvenile Chinese sturgeon (Acipenser sinensis Gray, 1835) exposed to different salinities. Zhao, F.,Qu, L.,Zhuang, P.,Zhang, L.,Liu, J.,Zhang, T.,Qu, L..

[17]Identification of salt-tolerant QTLs with strong genetic background effect using two sets of reciprocal introgression lines in rice. Cheng, Lirui,Wang, Yun,Meng, Lijun,Hu, Xia,Cui, Yanru,Sun, Yong,Zhu, Linghua,Xu, Jianlong,Li, Zhikang,Wang, Yun,Ali, Jauhar,Li, Zhikang.

[18]Increased glycine betaine synthesis and salinity tolerance in AhCMO transgenic cotton lines. Dong, Hezhong,Li, Weijiang,Kong, Xiangqiang,Zhang, Huijun,Sun, Yi,Chen, Shouyi.

[19]Co-expression of xerophyte Zygophyllum xanthoxylum ZxNHX and ZxVP1-1 confers enhanced salinity tolerance in chimeric sugar beet (Beta vulgaris L.). Wu, Guo-Qiang,Feng, Rui-Jun,Yuan, Hui-Jun,Wang, Suo-Min,Bao, Ai-Ke,Wei, Li,Wang, Chun-Mei. 2015

[20]Response of broomcorn millet (Panicum miliaceum L.) genotypes from semiarid regions of China to salt stress. Liu, Minxuan,Zhang, Shuang,Wang, Yinyue,Lu, Ping,Qiao, Zhijun,Wang, Yinyue. 2015

作者其他论文 更多>>

微信小程序