Transgressive and subgenome expression level dominance and co-expression network analyses at the early fiber development in allopolyploid Gossypium

文献类型： 外文期刊

第一作者： Xing, Aishuang

作者： Xing, Aishuang;Zhang, Xiaomeng;Wang, Jingjing;He, Shoupu;Nazir, Mian Faisal;Wang, Xiaoyang;Wang, Xiuxiu;Zhang, Haobo;Fu, Guoyong;Chen, Baojun;Peng, Zhen;Du, Xiongming;He, Shoupu;Yang, Ru;Peng, Zhen;Du, Xiongming;Peng, Zhen;Du, Xiongming

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关键词： Gossypium; Allopolyploidization; Homoeolog expression bias; Expression level dominance; RNA sequencing

期刊名称：INDUSTRIAL CROPS AND PRODUCTS （ 影响因子：5.9； 五年影响因子：6.0 ）

ISSN： 0926-6690

年卷期： 2024 年 214 卷

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收录情况： SCI

摘要： Polyploidization can lead to the emergence of new species. Allotetraploid cotton arose through hybridization and whole genome duplication of its diploid A and D genome progenitors. As a prominent global fiber crop, cotton serves as an excellent model organism for exploring plant evolutionary biology and fiber development, particularly in polyploidization. This study utilized transcriptomics to analyze expression difference between diploid and allotetraploid cotton, aiming to further the understanding of transcriptomic dynamics associated at different fiber developmental stages during polyploidization process. In this study, we identified additive and non -additive genes and clarified the contributions of non -additive genes during the tetraploid formation process. Furthermore, we constructed a gene co -expression network, providing new insights into the transcriptional regulation of polyploid cotton fiber development. Among non -additive genes, more A genome-biased expression level dominance (ELD-A) than D genome (ELD-D) occurred in the tetraploids. In Gossypium hirsutum , ELD-A genes played major roles during initial elongation, exerting greater dominance in fiber development. Transgressive genes impacted early fiber development in Gossypium barbadense . While the At subgenome profoundly influences tetraploid fiber development, Dt sub-genome activation, inheritance and sub/neo-functionalization promote superior high -yield traits. By constructing co -expression networks, we identified key fiber developmental candidate genes, providing valuable resources for functional research and breeding perspectives to develop superior cotton varieties.

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