The Brassica oleracea genome reveals the asymmetrical evolution of polyploid genomes

文献类型: 外文期刊

第一作者: Tong, Chaobo

作者: Tong, Chaobo;Zhao, Meixia;Yu, Jingyin;Huang, Shunmou;Hu, Qiong;Wang, Xinfa;Dong, Caihua;Hu, Zhiyong;Huang, Yi;Huang, Junyan;Shi, Jiaqin;Mei, Desheng;Liu, Jing;Hua, Wei;Liu, Yumei;Fang, Zhiyuan;Wu, Jian;Wang, Wanxin;Yang, Limei;Cheng, Feng;Zhuang, Mu;Zhang, Yangyong;Wang, Xiaowu;Yang, Xinhua;Wang, Junyi;Yue, Zhen;Yang, Linfeng;Zhou, Qing;Lu, Changxin;Wu, Zhangyan;Wang, Zhuo;Pan, Shengkai;Min, Jiumeng;Li, Wanshun;Huang, Yin;Liu, Wenbin;Xu, Xun;Liang, Xinming;Wang, Jun;Edwards, David;Ruperao, Pradeep;Parkin, Isobel A. P.;Zhao, Meixia;Ma, Jianxin;Wang, Xiyin;Guo, Hui;Zhang, Dong;Li, Jingping;Lee, Tae-Ho;Jin, Huizhe;Tang, Xu;Wang, Yupeng;Paterson, Andrew H.;Wang, Xiyin;Jin, Dianchuan;Wang, Li;Wang, Jinpeng;Wang, Xiyin;Jin, Dianchuan;Wang, Li;Wang, Jinpeng;Lu, Kun;Li, Jiana;Bancroft, Ian;Yang, Tae-Jin;Sampath, Perumal;Waminal, Nomar Espinosa;Lee, Jonghoon;Yang, Tae-Jin;Sampath, Perumal;Waminal, Nomar Espinosa;Lee, Jonghoon;Li, Hao

作者机构:

期刊名称:NATURE COMMUNICATIONS ( 影响因子:14.919; 五年影响因子:15.805 )

ISSN: 2041-1723

年卷期: 2014 年 5 卷

页码:

收录情况: SCI

摘要: Polyploidization has provided much genetic variation for plant adaptive evolution, but the mechanisms by which the molecular evolution of polyploid genomes establishes genetic architecture underlying species differentiation are unclear. Brassica is an ideal model to increase knowledge of polyploid evolution. Here we describe a draft genome sequence of Brassica oleracea, comparing it with that of its sister species B. rapa to reveal numerous chromosome rearrangements and asymmetrical gene loss in duplicated genomic blocks, asymmetrical amplification of transposable elements, differential gene co-retention for specific pathways and variation in gene expression, including alternative splicing, among a large number of paralogous and orthologous genes. Genes related to the production of anticancer phytochemicals and morphological variations illustrate consequences of genome duplication and gene divergence, imparting biochemical and morphological variation to B. oleracea. This study provides insights into Brassica genome evolution and will underpin research into the many important crops in this genus.

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