Mapping 49 quantitative trait loci at high resolution through sequencing-based genotyping of rice recombinant inbred lines

文献类型： 外文期刊

第一作者： Wang, Lu

作者： Wang, Lu;Wang, Ahong;Huang, Xuehui;Zhao, Qiang;Sang, Tao;Han, Bin;Wang, Lu;Wang, Ahong;Huang, Xuehui;Zhao, Qiang;Sang, Tao;Han, Bin;Dong, Guojun;Qian, Qian;Sang, Tao;Han, Bin

作者机构：

期刊名称：THEORETICAL AND APPLIED GENETICS （ 影响因子：5.699； 五年影响因子：5.565 ）

ISSN： 0040-5752

年卷期： 2011 年 122 卷 2 期

页码：

收录情况： SCI

摘要： Mapping chromosome regions responsible for quantitative phenotypic variation in recombinant populations provides an effective means to characterize the genetic basis of complex traits. We conducted a quantitative trait loci (QTL) analysis of 150 rice recombinant inbred lines (RILs) derived from a cross between two cultivars, Oryza sativa ssp. indica cv. 93-11 and Oryza sativa ssp. japonica cv. Nipponbare. The RILs were genotyped through next-generation sequencing, which accurately determined the recombination breakpoints and provided a new type of genetic markers, recombination bins, for QTL analysis. We detected 49 QTL with phenotypic effect ranging from 3.2 to 46.0% for 14 agronomics traits. Five QTL of relatively large effect (14.6-46.0%) were located on small genomic regions, where strong candidate genes were found. The analysis using sequencing-based genotyping thus offers a powerful solution to map QTL with high resolution. Moreover, the RILs developed in this study serve as an excellent system for mapping and studying genetic basis of agricultural and biological traits of rice.

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