Haplotypic Structure and Allelic Variation of rab17, an ABA-Responsive Gene, in a Mini Core Set of Chinese Diversified Maize Inbred Lines
文献类型: 外文期刊
第一作者: Yu Yong-tao
作者: Yu Yong-tao;Wang Rong-huan;Shi Yun-su;Song Yan-chun;Wang Tian-yu;Li Yu;Yu Yong-tao
作者机构:
关键词: allelic variation;drought tolerance;linkage disequilibrium;maize;rab17
期刊名称:AGRICULTURAL SCIENCES IN CHINA ( 影响因子:0.82; 五年影响因子:0.997 )
ISSN: 1671-2927
年卷期: 2010 年 9 卷 12 期
页码:
收录情况: SCI
摘要: Drought stress is one of the most important factors limiting maize production Rab17 is an ABA-responsive gene and associated with drought tolerance In order to identify haplotypic structure and mine allelic variants at rab17 locus, nucleotide diversity and linkage disequilibrium (LD) structure of rab17 were evaluated among a mini core set of Chinese diversified maize inbred lines Totally, 19 SNP and 18 insertion/deletions (InDels) were identified, among which 81% were in non-coding regions and 19% in coding regions The results showed that a high level of diversity appeared within 1 kb upstream of the rab17 locus, and declined quickly downstream of the gene region Rapid decay of linkage disequilibrium of rab17 region with distance within 1 kb was detected Functional markers which can be developed based on haplotype 14 are expected to have contribution to molecular breeding for drought tolerance
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