Characterization of autonomous Dart1 transposons belonging to the hAT superfamily in rice

文献类型： 外文期刊

第一作者： Shimatani, Zenpei

作者： Shimatani, Zenpei;Takagi, Kyoko;Eun, Chang-Ho;Hoshino, Atsushi;Terada, Rie;Johzuka-Hisatomi, Yasuyo;Iida, Shigeru;Tsugane, Kazuo;Shimatani, Zenpei;Hoshino, Atsushi;Terada, Rie;Iida, Shigeru;Tsugane, Kazuo;Maekawa, Masahiko;Takahara, Hiroyuki;Qian, Qian;Qian, Qian

作者机构：

关键词： Autonomous elements;DNA transposon;Epigenetic silencing;hAT superfamily;Transposition activity;Rice

期刊名称：MOLECULAR GENETICS AND GENOMICS （ 影响因子：3.291； 五年影响因子：3.257 ）

ISSN： 1617-4615

年卷期： 2009 年 281 卷 3 期

页码：

收录情况： SCI

摘要： An endogenous 0.6-kb rice DNA transposon, nDart1-0, was found as an active nonautonomous element in a mutable virescent line, pyl-v, displaying leaf variegations. Here, we demonstrated that the active autonomous element aDart in pyl-v corresponds to Dart1-27 on chromosome 6 in Nipponbare, which carries no active aDart elements, and that aDart and Dart1-27 are identical in their sequences and chromosomal locations, indicating that Dart1-27 is epigenetically silenced in Nipponbare. The identification of aDart in pyl-v was first performed by map-based cloning and by detection of the accumulated transposase transcripts. Subsequently, various transposition activities of the cloned Dart1-27 element from Nipponbare were demonstrated in Arabidopsis. Dart1-27 in Arabidopsis was able to excise nDart1-0 and Dart1-27 from cloned sites, generating footprints, and to integrate into new sites, generating 8-bp target site duplications. In addition to Dart1-27, Nipponbare contains 37 putative autonomous Dart1 elements because their putative transposase genes carry no apparent nonsense or frameshift mutations. Of these, at least four elements were shown to become active aDart elements in transgenic Arabidopsis plants, even though considerable sequence divergence arose among their transposases. Thus, these four Dart1 elements and Dart1-27 in Nipponbare must be potential autonomous elements silenced epigenetically. The regulatory and evolutionary implications of the autonomous Dart1 elements and the development of an efficient transposon-tagging system in rice are discussed.

分类号：

  • 相关文献

[1]Ac/Ds Transposition Activity in Transgenic Rice Population and DNA Flanking Sequence of Ds Insertion Sites. Zhu, ZG,Fu, YP,Xiao, H,Hu, GC,Si, HM,Yu, YH,Sun, ZH.

[2]Phytochrome B Negatively Affects Cold Tolerance by Regulating OsDREB1 Gene Expression through Phytochrome Interacting Factor-Like Protein OsPIL16 in Rice. He, Yanan,Li, Yaping,Cui, Lixin,Xie, Lixia,Zheng, Chongke,Zhou, Guanhua,Zhou, Jinjun,Xie, Xianzhi,Li, Yaping,Cui, Lixin. 2016

[3]A Kelch Motif-Containing Serine/Threonine Protein Phosphatase Determines the Large Grain QTL Trait in Rice. Hu, Zejun,Sun, Fan,Xin, Xiaoyun,Qian, Xi,Yang, Jingshui,Luo, Xiaojin,Hu, Zejun,He, Haohua,Wang, Wenxiang,Zhang, Shiyong. 2012

[4]Genome-wide identification of microRNAs and their targets in wild type and phyB mutant provides a key link between microRNAs and the phyB-mediated light signaling pathway in rice. Sun, Wei,wu, Xiu,Xie, Xianzhi,Xu, Xiao Hui,Lu, Xingbo,Sun, Hongwei,Wang, Yong. 2015

[5]Overexpression of an S-like ribonuclease gene, OsRNS4, confers enhanced tolerance to high salinity and hyposensitivity to phytochrome-mediated light signals in rice. Zheng, Jun,Wang, Yingying,He, Yanan,Zhou, Jinjun,Li, Yaping,Liu, Qianqian,Xie, Xianzhi,Zheng, Jun,Wang, Yingying,He, Yanan,Zhou, Jinjun,Xie, Xianzhi. 2014

[6]Distribution Characteristics of Soil Cadmium in Different Textured Paddy Soil Profiles and Its Relevance with Cadmium Uptake by Crops. Wang Zheng-yin,Qin Yu-sheng,Zhan Shao-jun,Yu Hua,Tu Shi-hua. 2013

[7]Overexpression of OsPIL15, a phytochromeinteracting factor- like protein gene, represses etiolated seedling growth in rice. Zhou, Jinjun,Liu, Qianqian,Wang, Yingying,Zhang, Shiyong,Cheng, Huimin,Yan, Lihua,Li, Li,Xie, Xianzhi,Zhou, Jinjun,Wang, Yingying,Zhang, Shiyong,Xie, Xianzhi,Liu, Qianqian,Xie, Xianzhi,Zhang, Fang,Chen, Fan. 2014

[8]DISTRIBUTION CHARACTERISTICS, BIOACCUMULATION, AND SOURCES OF MERCURY IN RICE AT NANSI LAKE AREA, SHANDONG PROVINCE, CHNIA. Liu, H.,Zhang, J.,Dai, J. L.,Wang, L. H.,Zhang, J.,Li, G. X.. 2015

[9]Nitrogen Status Diagnosis of Rice by Using a Digital Camera. Fan Ming-sheng,Zhang Fu-suo,Chen Xin-ping,Jia Liang-liang,Sun Yan-ming,Lue Shi-hua. 2009

[10]Influence of unflooded mulching cultivation on nitrogen uptake and utilization of fertilizer nitrogen by rice. Liu, Xuejun,Zhang, Fusuo,Mao, Daru,Zeng, Xingzhong,Lu, Shihua,Wang, Mingtian. 2008

[11]Overexpression of a phytochrome-regulated tandem zinc finger protein gene, OsTZF1, confers hypersensitivity to ABA and hyposensitivity to red light and far-red light in rice seedlings. Zhou, Jinjun,Fan, Zhongxue,Xie, Xianzhi,Zhang, Cheng,Zhou, Jinjun,Fan, Zhongxue,Xie, Xianzhi,Zhang, Cheng,Ma, Huiquan,Zhang, Fang,Chen, Fan. 2012

[12]Enhancement of innate immune system in monocot rice by transferring the dicotyledonous elongation factor Tu receptor EFR. Lu, Fen,Wang, Huiqin,Wang, Shanzhi,Jiang, Wendi,Yang, Jun,Sun, Wenxian,Lu, Fen,Wang, Huiqin,Wang, Shanzhi,Jiang, Wendi,Yang, Jun,Sun, Wenxian,Shan, Changlin,Li, Bin,Shan, Changlin,Li, Bin,Yang, Jun,Zhang, Shiyong. 2015

[13]A missense mutation in the transmembrane domain of CESA9 affects cell wall biosynthesis and plant growth in rice. Wang, Daofeng,Lan, Jinhao,Wang, Daofeng,Zhao, Jinfeng,Li, Xueyong,Yuan, Shoujiang,Yin, Liang,Guo, Baotai. 2012

[14]Mutations in the MIT3 gene encoding a caroteniod isomerase lead to increased tiller number in rice. Liu, Lihua,Peng, Peng,Qiu, Haiyang,Zhao, Jinfeng,Fang, Jingjing,Patil, Suyash Bhimgonda,Li, Xueyong,Xie, Tingting,Zhang, Wenhui,Wang, Yiqin,Fang, Shuang,Chu, Jinfang,Yuan, Shoujiang. 2018

[15]Detection of epistatic interactions of three QTLs for heading date in rice using single segment substitution lines. Ding, Han-Feng,Liu, Xu,Li, Run-Fang,Wang, Wen-Ying,Zhang, Y.,Zhang, Xiao-Dong,Yao, Fang-Yin,Li, Guang-Xian,Jiang, Ming-Song,Ding, Han-Feng.

[16]Delimitation of the PSH1(t) gene for rice purple leaf sheath to a 23.5 kb DNA fragment. Wang, Wen-Ying,Ding, Han-Feng,Li, Run-Fang,Liu, Xu,Zhang, Yu,Yao, Fang-Yin,Li, Guang-Xian,Jiang, Ming-Song.

[17]Determination of 5-hydroxymethyl-2-deoxycytidine in Rice by High-performance Liquid Chromatography-Tandem Mass Spectrometry with Isotope Dilution. Wang, Xiaoli,Wang, Shanshan,Chen, Xiangfeng,Chen, Yue,Yuan, Jinpeng,Zhao, Rusong,Guo, Tao. 2017

[18]Functional Marker Development and Effect Analysis of Grain Size Gene GW2 in Extreme Grain Size Germplasm in Rice. Zhang Ya-dong,Zheng Jia,Liang Yan-li,Zhao Chun-fang,Chen Tao,Zhao Qing-yong,Zhu Zhen,Zhou Li-hui,Yao Shu,Zhao Ling,Yu Xing,Wang Cai-lin. 2015

[19]Synonymous codon usage and gene function are strongly related in Oryza sativa. Liu, QP,Dou, SJ,Ji, ZJ,Xue, QZ. 2005

[20]Correlation between appearance of embryogenic cells and the IAA levels in rice somatic cell culture. Chen, YF,Zhou, X,Tang, RS,Zhang, JY,Mei, CS. 1998

作者其他论文 更多>>

微信小程序