Genetic structure of Oryza rufipogon Griff. in China

文献类型： 外文期刊

第一作者： Wang, M. X.

作者： Wang, M. X.;Zhang, H. L.;Zhang, D. L.;Qi, Y. W.;Yu, P.;Wang, X. K.;Li, Z. C.;Fan, Z. L.;Pan, D. J.;Li, D. Y.;Cao, Y. S.;Qiu, Z. E.;Yang, Q. W.

作者机构：

关键词： China;common wild rice;SSR (simple sequence repeat);genetic structure

期刊名称：HEREDITY （ 影响因子：3.821； 五年影响因子：4.553 ）

ISSN： 0018-067X

年卷期： 2008 年 101 卷 6 期

页码：

收录情况： SCI

摘要： Oryza rufipogon Griff. (common wild rice; CWR) is the ancestor of Asian cultivated rice (Oryza sativa L.). Investigation of the genetic structure and diversity of CWR in China will provide information about the origin of cultivated rice and the grain quality and yield. In this study, we used 36 simple sequence repeat (SSR) markers to assay 889 accessions, which were highly representative of whole germplasm in China. The analysis revealed a hierarchical genetic structure within CWR. First, CWR has diverged into two ecotypic populations, a south subtropical population (SSP) and a middle subtropical population (MSP), probably owing to natural selection by the different climates. The distribution of specific alleles and haplotypes indicated that Chinese CWR had both indica-like and japonica-like variations; the SSP was an indica-like type, whereas the MSP was more japonica-like. The SSP and MSP further diverged into five (HN, GD-GX1, GX2, FJ and YN) and two (JX-HuN1 and HuN2) geographical populations, respectively. The genetic data suggest the isolation by distance, although water systems also appear to play an important role in the formation of homogenous populations, and occasionally landscape was also involved. The population GD-GX1, which grew widely in Guangdong and Guangxi provinces, was the largest geographical population in China. It had a high level of genetic diversity (GD) and the closest genetic relationship with other inferred populations. The population HN, with the smallest SSR molecular weights and the highest level of GD, may be the most ancestral population. Heredity (2008) 101, 527-535; doi: 10.1038/hdy.2008.61; published online 1 October 2008

分类号：

  • 相关文献

[1]Analysis of QTLs for yield-related traits in Yuanjiang common wild rice (Oryza rufipogon Griff.). Fu, Qiang,Tan, Lubin,Zhu, Zuofeng,Ma, Dan,Fu, Yongcai,Cai, Hongwei,Sun, Chuanqing,Fu, Qiang,Zhang, Peijiang,Zhan, Xinchun. 2010

[2]Establishment of a rice transgene flow model for predicting maximum distances of gene flow in Southern China. Yao, Kemin,Hu, Ning,Chen, Wanlong,Li, Renzhong,Yuan, Qianhua,Wang, Feng,Qian, Qian. 2008

[3]Rapid mapping of candidate genes for cold tolerance in Oryza rufipogon Griff. by QTL-seq of seedlings. Luo Xiang-dong,Liu Jian,Zhao Jun,Dai Liang-fang,Chen Ya-ling,Zhang Ling,Zhang Fan-tao,Xie Jian-kun,Hu Biao-lin. 2018

[4]Quantitative trait loci underlying domestication and yield-related traits in an Oryza sativa x Oryza rufipogon advanced backcross population. Tan, Lubin,Liu, Fengxia,Wang, Guijuan,Ye, Sheng,Zhu, Zuofeng,Fu, Yongcai,Cai, Hongwei,Sun, Chuanqing,Tan, Lubin,Liu, Fengxia,Wang, Guijuan,Ye, Sheng,Zhu, Zuofeng,Fu, Yongcai,Cai, Hongwei,Sun, Chuanqing,Tan, Lubin,Liu, Fengxia,Wang, Guijuan,Ye, Sheng,Zhu, Zuofeng,Fu, Yongcai,Cai, Hongwei,Sun, Chuanqing,Tan, Lubin,Liu, Fengxia,Wang, Guijuan,Ye, Sheng,Zhu, Zuofeng,Fu, Yongcai,Cai, Hongwei,Sun, Chuanqing,Tan, Lubin,Liu, Fengxia,Wang, Guijuan,Ye, Sheng,Zhu, Zuofeng,Fu, Yongcai,Cai, Hongwei,Sun, Chuanqing,Zhang, Peijiang. 2008

[5]Linkage map construction and QTL mapping for cold tolerance in Oryza rufipogon Griff. at early seedling stage. Luo Xiang-dong,Zhao Jun,Dai Liang-fang,Zhang Fan-tao,Zhou Yi,Xie Jian-kun,Wan Yong. 2016

[6]Development and identification of a introgression line with strong drought resistance at seedling stage derived from Oryza sativa L. mating with Oryza rufipogon Griff. Zhang, Fantao,Cui, Fenglei,Zhang, Liangxing,Wen, Xiufang,Luo, Xiangdong,Zhou, Yi,Zhang, June,Xie, Jiankun,Li, Xia,Wan, Yong.

[7]Linkage map construction and QTL identification of P-deficiency tolerance in Oryza rufipogon Griff. at early seedling stage. Luo, Xiang-Dong,Liu, Jian,Dai, Liang-Fang,Zhang, Fan-Tao,Xie, Jian-Kun,Wan, Yong.

[8]Genetic differentiation in seven geographic populations of the fleshy shrimp Penaeus (Fenneropenaeus) chinensis based on microsatellite DNA. Meng, Xian Hong,Wang, Qing Yin,Liu, Ping,Kong, Jie,Meng, Xian Hong,Jang, In Kwon.

[9]Population genetic structure and expansion patterns of the cotton pest Adelphocoris fasciaticollis. Lijuan Zhang,Cui, Jinjie,Wanzhi Cai,Junyu Luo,Shuai Zhang,Wendan Li,Chunyi Wang,Limin Lv,Jinjie Cui. 2018

[10]Genetic diversity and differentiation of Chinese wild soybean germplasm (G-soja Sieb. & Zucc.) in geographical scale revealed by SSR markers. Li, X. H.,Wang, K. J.,Jia, J. Z.,Li, X. H.. 2009

[11]Genetic Diversity Revealed by Single Nucleotide Polymorphism Markers in a Worldwide Germplasm Collection of Durum Wheat. Sun, Daokun,Chen, Liang,Peng, Junhua,Ren, Jing,You, Frank M.,Wang, Jirui,Luo, Ming-Cheng,You, Frank M.,Peng, Yunliang,Nevo, Eviatar,Sun, Dongfa,Peng, Junhua. 2013

[12]Simple sequence repeat-based analysis of the genetic diversity and population genetic structure of populations of Siniperca chuatsi. Sun, C. F.,Ye, X.,Tian, Y. Y.,Dong, J. J.. 2015

[13]High genetic diversity and differentiation in three red tilapia stocks revealed by microsatellite DNA marker analysis. Zhu, W. B.,Yang, H.,Yuan, X. H.,Dong, Z. J.,Fu, J. J.,Wang, L. M.,Su, S. Y.,Liu, N.,Song, F. B.,Chen, X. T.,Zhu, W. B.,Yuan, X. H.,Dong, Z. J.,Fu, J. J.,Wang, L. M.,Su, S. Y.. 2017

[14]Genetic diversity and structure within and between wild and cultivated Saccharina japonica (Laminariales, Phaeophyta) revealed by SSR markers. Liu, Fuli,Yao, Jianting,Wang, Xiuliang,Duan, Delin,Liu, Fuli,Repnikova, Anna,Galanin, Dmitry A.. 2012

[15]Assessing the genetic structure of three Japanese flounder (Paralichthys olivaceus) stocks by microsatellite markers. Liu, YG,Chen, SL,Li, BF. 2005

[16]Global haplotype analysis of the whitefly Bemisia tabaci cryptic species Asia I in Asia. Hu, Jian,Chen, Yong-Dui,Zhang, Zhong-Kai,Jiang, Zhi-Lin,Nardi, Francesco,Yang, Tai-Yuan,Jin, Jie. 2015

[17]Development of thirty-four novel polymorphic microsatellite markers in Coilia ectenes (Clupeiformes: Engraulidae) and cross-species amplification in two closely related taxa. Chen, Fang,Zeng, Liyan,Cheng, Qiqun,Chen, Fang. 2012

[18]Genetic diversity in the bronze gudgeon, Coreius heterodon, from the Yangtze River system based on mtDNA sequences of the control region. Yan, Li,Wang, Dengqiang,Fang, Yaoling,Liu, Shaoping,Duan, Xinbing,Chang, Yonghua,Chen, Daqing,Yan, Li. 2008

[19]Demographic History and Population Structure of Blackfin Flounder (Glyptocephalus stelleri) in Japan Revealed by Mitochondrial Control Region Sequences. Xiao, Yongshuang,Gao, Tianxiang,Zhang, Yan,Yanagimoto, Takashi. 2010

[20]Analysis of the genetic structure of Sclerotinia sclerotiorum (Lib.) de Bary - Populations from different regions and host plants by random amplified polymorphic DNA markers. Sun, JM,Irzykowski, W,Jedryczka, M,Han, FX. 2005

作者其他论文 更多>>

微信小程序