Phylogenetic and expression analysis of ZnF-AN1 genes in plants

文献类型: 外文期刊

第一作者: Jin, Ying

作者: Jin, Ying;Wang, Meng;Fu, Junjie;Xuan, Ning;Zhu, Yun;Lian, Yun;Jia, Zhiwei;Zheng, Jun;Wang, Guoying

作者机构:

关键词: ZnF-AN1;evolution;expression;abiotic stress;gene expansion

期刊名称:GENOMICS ( 影响因子:5.736; 五年影响因子:4.939 )

ISSN: 0888-7543

年卷期: 2007 年 90 卷 2 期

页码:

收录情况: SCI

摘要: In plants, ZnF-AN1 genes are part of a multigene family with 13 members in Arabidopsis thaliana, 19 members in Populus trichocarpa, 17 members in Oryza sativa, at least 11 members in Zea mays, and 2 members in Chlamydomonas reinhardtii. All ZnF-AN1 genes contain the ZnF-AN1 domain. According to the phylogenetic analysis of the ZnF-AN1 domain, we divided plant ZnF-AN1 genes into two types. The coding sequences of most type I members do not possess any introns, while most type II members do possess intron(s). Through Northern blot analysis of maize members and digital Northern analysis of Arabidopsis members, we found that most ZnF-AN1 genes are involved in responses to abiotic stresses. The evolutionary analysis indicated that the expansion rate of type I was higher than that of type II. After expansion, some ZnF-AN1 genes may have gained new functions, some may have lost their functions, and some were specialized to perform their functions in stress-specific or tissue-specific modes. In addition, we propose an evolutionary model of type II ZnF-AN I genes in plants. (c) 2007 Elsevier Inc. All rights reserved.

分类号:

  • 相关文献

[1]Isolation and characterization of a cDNA encoding a papain-like cysteine protease from alfalfa. Yan, Longfeng,Han, Jianguo,Sun, Yan,Yan, Longfeng,Yang, Qingchuan,Kang, Junmei,Liu, Zhipeng,Wu, Mingsheng.

[2]Phenylalanine ammonia-lyase gene families in cucurbit species: Structure, evolution, and expression. Dong Chun-juan,Cao Ning,Zhang Zhi-gang,Shang Qing-mao. 2016

[3]Functional opsin retrogene in nocturnal moth. Xiao, Haijun,Wu, Kongming,Xu, Pengjun,Feuda, Roberto,Lu, Bin,Graham, Robert I.. 2016

[4]Genome-wide analysis of SINA family in plants and their phylogenetic relationships. Wang, Meng,Jin, Ying,Fu, Junjie,Zhu, Yun,Hu, Jian,Wang, Guoying,Zheng, Jun,Wang, Guoying.

[5]Molecular cloning, expression, and evolution analysis of type II CHI gene from peanut (Arachis hypogaea L.). Liu, Yu,Zhao, Shuzhen,Wang, Jiangshan,Zhao, Chuanzhi,Hou, Lei,Li, Changsheng,Xia, Han,Guan, Hongshan,Wang, Xingjun,Liu, Yu,Wang, Xingjun.

[6]Bioinformatics analysis of rabbit haemorrhagic disease virus genome. Tian, Xiao-ting,Li, Bao-yu,Zhang, Liang,Jiao, Wen-qiang,Liu, Ji-xing. 2011

[7]Small auxin upregulated RNA (SAUR) gene family in maize: Identification, evolution, and its phylogenetic comparison with Arabidopsis, rice, and sorghum. Chen, Yuzhu,Cao, Jun,Hao, Xi. 2014

[8]Identification of the trehalose-6-phosphate synthase gene family in winter wheat and expression analysis under conditions of freezing stress. Xie, D. W.,Wang, X. N.,Fu, L. S.,Sun, J.,Li, Z. F.,Xie, D. W.,Zheng, W..

[9]Dynein light chain family genes in 15 plant species: Identification, evolution and expression profiles. Cao, Jun,Lv, Yueqing,Li, Xiangyang.

[10]The genome sequence of the multinucleocapsid nucleopolyhedrovirus of the Chinese oak silkworm Antheraea pernyi. Fan, Qi,Li, Shuying,Wang, Linmei,Zhang, Bo,Ye, Bo,Zhao, Zhenjun,Cui, Liwang.

[11]Isolation and functional characterization of HvDREB1-a gene encoding a dehydration-responsive element binding protein in Hordeum vulgare. Xu, Zhao-Shi,Ni, Zhi-Yong,Li, Zhi-Yong,Li, Lian-Cheng,Chen, Ming,Gao, Dong-Yao,Yu, Xiu-Dao,Liu, Pei,Ma, You-Zhi.

[12]Characterization and expression analysis of six MADS-box genes in maize (Zea mays L.). Zhang, Zhongbao,Li, Huiyong,Zhang, Dengfeng,Liu, Yinghui,Fu, Jing,Shi, Yunsu,Song, Yanchun,Wang, Tianyu,Li, Yu,Zhang, Zhongbao,Liu, Yinghui. 2012

[13]Genome-Wide Identification and Expression Analysis of the Mitogen-Activated Protein Kinase Gene Family in Cassava. Yan, Yan,Ding, Zehong,Tie, Weiwei,Ding, Xupo,Zeng, Changying,Wei, Yunxie,Peng, Ming,Hu, Wei,Wang, Lianzhe,Zhao, Hongliang. 2016

[14]A set of miRNAs from Brassica napus in response to sulphate deficiency and cadmium stress. Huang, Si Qi,Xiang, An Ling,Che, Li Ling,Li, Hui,Song, Jian Bo,Yang, Zhi Min,Chen, Song.

[15]Genome-wide survey and expression analysis of the calcium-dependent protein kinase gene family in cassava. Hu, Wei,Hou, Xiaowan,Xia, Zhiqiang,Yan, Yan,Wei, Yunxie,Zou, Meiling,Lu, Cheng,Wang, Wenquan,Peng, Ming,Wang, Lianzhe.

[16]A specific type of cyclin-like F-box domain gene is involved in the cryogenic autolysis of Volvariella volvacea. Gong, Ming,Chen, Mingjie,Wang, Hong,Tan, Qi,Gong, Ming,Zhu, Qiuming.

[17]Comparative genomic analysis of aspartic proteases in eight parasitic platyhelminths: Insights into functions and evolution. Wang, Shuai,Wei, Wei,Luo, Xuenong,Cai, Xuepeng,Wang, Sen,Hu, Songnian.

[18]Renaturation and purification of ApxII toxin of Actinobacillus pleuropneumoniae. Wang, Chunlai,Liu, Siguo,Peng, Yonggang,Shao, Meili,Wang, Yong,Gong, Qiang,Chang, Yuehong,Liu, Jiandong,Liu, Huifang,Liu, Di,Kong, Xiangang.

[19]Expression of Prolactin Receptor mRNA after Melatonin Manipulated in Cashmere Goats Skin during Cashmere Growth. Zhang, Wei,Zhu, Xiaoping,Jia, Zhihai,Yue, Chunwang,Kong, Xianghao,Du, Lixin.

[20]Effects of age and strain on the expression of leptin receptor, neuropeptide Y and pro-opiomelanocortin in the hypothalamus of young chickens. Huang, J. X.,Lu, L.,Luo, X. G.,Liu, B.,Huang, J. X.,Lu, L.,Luo, X. G.,Liu, B.,Huang, J. X.,Xi, L..

作者其他论文 更多>>