Whole-Genome Sequencing of Fusarium oxysporum f. sp. cucumerinum Strain Race-4 Infecting Cucumber in China
文献类型： 外文期刊
第一作者： Yang, Jingjing
作者： Yang, Jingjing;Wang, Yixin;Wang, Qian;Yang, Jingjing;Mao, Aijun;Zhang, Jian;Zhang, Xiaofei;Xia, Changxuan;Zhao, Hong;Wen, Changlong;Liu, Hui
作者机构：
关键词： cucumber Fusarium wilt; Fusarium oxysporum f; sp; cucumerinum; gene annotation; genome assembly; race-4
期刊名称：PLANT DISEASE （ 影响因子：4.5； 五年影响因子：5.0 ）
ISSN： 0191-2917
年卷期： 2023 年
页码：
收录情况： SCI
摘要： Fusarium oxysporum f. sp. cucumerinum, which causes root and vascular wilting, is one of the most devastating diseases infecting cucumber. Here, we report the first genome resource with high-quality assembly for F. oxysporum f. sp. cucumerinum strain Race-4, which is primarily endemic to China. The genome was 59.11 Mb in size and consisted of 48 scaffolds with an N50 of 3.87 Mb using PacBio long reads (301.77x) sequencing, and encodes 14,898 proteins from analyzing RNA-seq data. Gene annotations identified pathogen-host interaction genes, fungal virulence factors, secreted proteins, transcription factors, and secondary metabolite biosynthesis gene. Moreover, functional genes reported in previous studies were also identified in the genome of Race-4. These genes and genome resource may play important roles in understanding F. oxysporum f. sp. cucumerinum-cucumber interactions and will be useful for further research.
分类号：
- 相关文献
作者其他论文 更多>>
-
Effect of crowding stress on liver health, gut permeability and gut microbiota of genetically improved farmed tilapia (GIFT, Oreochromis niloticus)
作者：Zhang, Jian;Chen, Jie;Liang, Hui;Li, Ming;Zhou, Wenhao;Zhou, Zhigang;Yang, Yalin;Zhang, Zhen;Ran, Chao;Ding, Qianwen
关键词：Crowing stress; Apoptosis; Gut permeability; Gut microbiota; GIFT
-
Pathogenicity of Bipolaris oryzae isolated from banana to different plant species
作者：Zhang, Zhaojing;Zhao, Hong;Zhang, Zhaojing;Zhao, Hong;Ouyang, Yanfei;Zhang, Xin;Qi, Yanxiang;Ouyang, Yanfei
关键词：
Bipolaris oryzae ; Host range; Identification; In vitro inoculation -
Telomere-to-telomere genome assembly of eggplant ( Solanum melongena L.) promotes gene fine localization of the green stripe (GS) in pericarp
作者：Fang, Huarong;Wu, Jie;Xie, Liang;Li, Yizhiqi;Huang, Jingjing;Yan, Xiaoyun;He, Xuehan;Deng, Wentao;Li, Ruirui;Yu, Wenjin;Wang, Peng;Chen, Jie;Ji, Yanhai;Wen, Changlong
关键词：Eggplant; T2T genome; Green stripe
-
Flow Velocity Modulates Growth, Oxidative Stress, and Transcriptomic Responses in Spotted Sea Bass (Lateolabrax maculatus)
作者：Li, Shuo;Wang, Qian;Liu, Baoliang;Shao, Changwei;Li, Shuo;Liu, Yuyan;Wang, Qian;Zhu, Zhiwen;Li, Weijing;Li, Chen;Fei, Fan;Liu, Baoliang;Shao, Changwei;Liu, Yuyan;Wang, Qian;Shao, Changwei
关键词：Spotted sea bass; Flow velocity; Oxidative stress; Lipid metabolism; Transcriptomics
-
Near complete genome assembly of Yadong trout (Salmo trutta)
作者：Li, Chen;Han, Shenglei;Li, Shuo;Liu, Kaiqiang;Liu, Yuyan;Wang, Hong-yan;Wang, Qian;Liu, Changlin;Shao, Changwei;Li, Chen;Li, Chen;Han, Shenglei;Li, Shuo;Liu, Kaiqiang;Liu, Yuyan;Wang, Hong-yan;Wang, Qian;Liu, Changlin;Shao, Changwei;Liu, Kaiqiang;Liu, Yuyan;Wang, Hong-yan;Wang, Qian;Shao, Changwei
关键词：
-
Konjac glucomannan: A key ingredient for controlling fibrous structure formation in walnut protein and wheat gluten meat analogues during the high-moisture extrusion process
作者：Lei, Shuwen;Zhao, Chunyan;Zhao, Hong;Fu, Xiaoping;Gong, Jiashun;Gong, Jiashun;Peng, Chunxiu;Miao, Yue
关键词：Walnut protein; Wheat gluten; Konjac glucomannan; Meat analogues; Fibrous structure formation; High-moisture extrusion process
-
Lignocellulosic fibers in leaves and stems of Brassica juncea: Natural variation, functional differentiation and allocation mechanisms
作者：Wang, Qian;Zhang, Jinze;Yan, Zhongbin;Wang, Ziping;Peng, Wenyan;Ouyang, Qingjing;Jin, Hairui;Tian, Entang;Jiang, Yingfen
关键词：Brassica juncea; Lignocellulose; Cellulose; Hemicellulose; Lignin
