Wolfberry genome database: integrated genomic datasets for studying molecular biology

文献类型： 外文期刊

第一作者： Cao, You-Long

作者： Cao, You-Long;Li, Yan-Long;Fan, Yun-Fang;Luo, Qing;Zhao, Jian-Hua;Yin, Yue;An, Wei;Shi, Zhi-Gang;Cao, You-Long;Li, Yan-Long;Fan, Yun-Fang;Luo, Qing;Zhao, Jian-Hua;Yin, Yue;An, Wei;Shi, Zhi-Gang;Chen, You-Yi;Li, Chung-, I;Lin, Shao-Ting;Tsai, Wen-Chieh;Lin, Shao-Ting;Tsai, Wen-Chieh;Lee, Bing-Ru;Hsieh, Chun-Lin;Wu, Wei-Sheng;Hsiao, Yu-Yun;Tsai, Wen-Chieh;Chow, Chi-Nga;Chang, Wen-Chi;Tsai, Wen-Chieh;Huang, Chun-Lin;Chang, Wei-Hung;Chang, Wei-Hung;Liu, Zhong-Jian;Liu, Zhong-Jian;Liu, Zhong-Jian;Liu, Zhong-Jian;Tsai, Wen-Chieh;Tsai, Wen-Chieh

作者机构：

关键词： wolfberry; Lycium barbarum; wolfberry genome database (WGDB); user-friendly; genomics; transcriptomics

期刊名称：FRONTIERS IN PLANT SCIENCE （ 影响因子：5.6； 五年影响因子：6.8 ）

ISSN： 1664-462X

年卷期： 2024 年 15 卷

页码：

收录情况： SCI

摘要： Wolfberry, also known as goji berry or Lycium barbarum, is a highly valued fruit with significant health benefits and nutritional value. For more efficient and comprehensive usage of published L. barbarum genomic data, we established the Wolfberry database. The utility of the Wolfberry Genome Database (WGDB) is highlighted through the Genome browser, which enables the user to explore the L. barbarum genome, browse specific chromosomes, and access gene sequences. Gene annotation features provide comprehensive information about gene functions, locations, expression profiles, pathway involvement, protein domains, and regulatory transcription factors. The transcriptome feature allows the user to explore gene expression patterns using transcripts per kilobase million (TPM) and fragments per kilobase per million mapped reads (FPKM) metrics. The Metabolism pathway page provides insights into metabolic pathways and the involvement of the selected genes. In addition to the database content, we also introduce six analysis tools developed for the WGDB. These tools offer functionalities for gene function prediction, nucleotide and amino acid BLAST analysis, protein domain analysis, GO annotation, and gene expression pattern analysis. The WGDB is freely accessible at https://cosbi7.ee.ncku.edu.tw/Wolfberry/. Overall, WGDB serves as a valuable resource for researchers interested in the genomics and transcriptomics of L. barbarum. Its user-friendly web interface and comprehensive data facilitate the exploration of gene functions, regulatory mechanisms, and metabolic pathways, ultimately contributing to a deeper understanding of wolfberry and its potential applications in agronomy and nutrition.

分类号：

  • 相关文献
作者其他论文 更多>>

微信小程序