863 genomes reveal the origin and domestication of chicken

文献类型： 外文期刊

第一作者： Wang, Ming-Shan

作者： Wang, Ming-Shan;Thakur, Mukesh;Peng, Min-Sheng;Frantz, Laurent Alain Francois;Zhang, Jin-Jin;Wang, Sheng;Otecko, Newton Otieno;Esmailizadeh, Ali;Hirimuthugoda, Nalini Yasoda;Shen, Quan-Kuan;Zeng, Lin;Yang, Min-Min;Wu, Ya-Jiang;Yang, Xing-Yan;Lu, Xue-Mei;Jin, Jie-Qiong;Li, Ming-Li;Liu, Yan-Hu;Chen, Hong-Man;Ma, Cheng;Dai, Shan-Shan;Zhang, Guojie;Wu, Dong-Dong;Zhang, Ya-Ping;Wang, Ming-Shan;Peng, Min-Sheng;Zhang, Jin-Jin;Wang, Sheng;Otecko, Newton Otieno;Shen, Quan-Kuan;Zeng, Lin;Yang, Min-Min;Lu, Xue-Mei;Li, Ming-Li;Liu, Yan-Hu;Chen, Hong-Man;Ma, Cheng;Dai, Shan-Shan;Wu, Dong-Dong;Zhang, Ya-Ping;Thakur, Mukesh;Peng, Min-Sheng;Lu, Xue-Mei;Zhang, Guojie;Wu, Dong-Dong;Zhang, Ya-Ping;Jiang, Yu;Li, Ming;Zheng, Zhu-Qing;Frantz, Laurent Alain Francois;Larson, Greger;Frantz, Laurent Alain Francois;Peters, Joris;Peters, Joris;Peters, Joris;Suwannapoom, Chatmongkon;Guo, Xing;Esmailizadeh, Ali;Sohrabi, Saeed;Kharrati-Koopaee, Hamed;Hirimuthugoda, Nalini Yasoda;Gunwardana, Humpita Gamaralalage Thilini Nisanka;Senasige, Thilina Madusanka;Ashari, Hidayat;Suladari, Sri;Zein, Moch Syamsul Arifin;Ashari, Hidayat;Han, Jian-Lin;Kusza, Szilvia;Kharrati-Koopaee, Hamed;Wu, Ya-Jiang;Yang, Xing-Yan;Zhang, Ya-Ping;Jia, Xin-Zheng;Mwai, Okeyo Ally;Ibrahim, Mohamed Nawaz Mohamed;Han, Jian-Lin;Jia, Xin-Zheng;Lamont, Susan Joy;Nie, Qing-Hua;Lasagna, Emiliano;Ceccobelli, Simone;Feng, Shao-Hong;Si, Jing-Fang;Zhang, Hao;Jin, Jie-Qiong;Bhuiyan, Abul Kashem Fazlul Haque;Khan, Muhammad Sajjad;Silva, Gamamada Liyanage Lalanie Pradeepa;Thi-Thuy Le;Supple, Megan;Shapiro, Beth;Shapiro, Beth;Hanotte, Olivier;Hanotte, Olivier;Zhang, Guojie;Zhang, Guojie;Wang, Ming-Shan

作者机构：

期刊名称：CELL RESEARCH （ 影响因子：25.617； 五年影响因子：25.924 ）

ISSN： 1001-0602

年卷期： 2020 年 30 卷 8 期

页码：

收录情况： SCI

摘要： Despite the substantial role that chickens have played in human societies across the world, both the geographic and temporal origins of their domestication remain controversial. To address this issue, we analyzed 863 genomes from a worldwide sampling of chickens and representatives of all four species of wild jungle fowl and each of the five subspecies of red jungle fowl (RJF). Our study suggests that domestic chickens were initially derived from the RJF subspeciesGallus gallus spadiceuswhose present-day distribution is predominantly in southwestern China, northern Thailand and Myanmar. Following their domestication, chickens were translocated across Southeast and South Asia where they interbred locally with both RJF subspecies and other jungle fowl species. In addition, our results show that the White Leghorn chicken breed possesses a mosaic of divergent ancestries inherited from other subspecies of RJF. Despite the strong episodic gene flow from geographically divergent lineages of jungle fowls, our analyses show that domestic chickens undergo genetic adaptations that underlie their unique behavioral, morphological and reproductive traits. Our study provides novel insights into the evolutionary history of domestic chickens and a valuable resource to facilitate ongoing genetic and functional investigations of the world's most numerous domestic animal.

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