Development of MHC Class I and II B Primers in Common Carp and its Molecular Characterization

文献类型： 外文期刊

第一作者： Jia, Zhiying

作者： Jia, Zhiying;Chi, Xifeng;Li, Chitao;Shi, Lianyu;Chi, Xifeng

作者机构：

关键词： MHC;Common carp;Polymorphic;Variable nucleotide site

期刊名称：BIOCHEMICAL GENETICS （ 影响因子：1.89； 五年影响因子：1.959 ）

ISSN： 0006-2928

年卷期： 2010 年 48 卷 7-8 期

页码：

收录情况： SCI

摘要： The major histocompatibility complex (MHC) has an important role in immune response and is known as the most polymorphic locus in vertebrates. We developed three pairs of polymerase chain reaction primers of the alpha-2 domain (exon 3) of MHC class I and the beta-2 (exon 3) and beta-3 domains (exon 4) of MHC class II B gene in the German mirror common carp (Cyprinus carpio L.). We analyzed the three loci in a population of 65 individuals that had suffered the serious disease of gill rot. Five to six variable nucleotide sites and two to six variable amino acid sites (71.43%) were detected in the exon sequence of the sampled populations, indicating that many of them corresponded to amino acids involved in antigen recognition. Deviation from Hardy-Weinberg equilibrium and linkage disequilibrium were differentially found in some loci, which will be important for further study of disease resistance/susceptibility and population evolution.

分类号：

  • 相关文献

[1]Novel polymorphic microsatellite markers isolated from the pen shell Atrina pectinata (Mollusca: Bivalvia: Pinnidae). Wu, B.,Bai, L. J.,Yang, A. G.,Zhou, L. Q.,Liu, Z. H.,Bai, L. J.. 2014

[2]Rapid identification of red-flesh loquat cultivars using EST-SSR markers based on manual cultivar identification diagram strategy. Li, X. Y.,Xu, H. X.,Chen, J. W.. 2014

[3]Characterization of 15 polymorphic microsatellite loci for the jellyfish Rhopilema esculentum. Zhu, Ling,Yang, Ao-ao,Zhou, Chun-ya,Yang, Hong,Luo, Xiao-rui,Chen, Si-Qing,Zhuang, Zhi-meng,Yang, Ao-ao,Yang, Hong,Luo, Xiao-rui.

[4]A genetic linkage map and comparative genome analysis of common carp (Cyprinus carpio L.) using microsatellites and SNPs. Zheng, Xianhu,Kuang, Youyi,Zhang, Xiaofeng,Lu, Cuiyun,Cao, Dingchen,Li, Chao,Sun, Xiaowen,Zheng, Xianhu. 2011

[5]High Throughput Mining and Characterization of Microsatellites from Common Carp Genome. Ji, Peifeng,Zhang, Yan,Zhao, Zixia,Wang, Jian,Li, Jiongtang,Xu, Peng,Sun, Xiaowen,Li, Chao,Sun, Xiaowen. 2012

[6]Genome evolution trend of common carp (Cyprinus carpio L.) as revealed by the analysis of microsatellite loci in a gynogentic family. Zhang, Yan,Liang, Liqun,Jiang, Peng,Li, Dayu,Lu, Cuiyun,Sun, Xiaowen,Zhang, Yan,Jiang, Peng,Li, Dayu. 2008

[7]Development and evaluation of the first high-throughput SNP array for common carp (Cyprinus carpio). Xu, Jian,Zhao, Zixia,Li, Jiongtang,Jiang, Yanliang,Zhang, Yan,Li, Qiang,Zhu, Yuanyuan,Liu, Yuanyuan,Xu, Peng,Sun, Xiaowen,Zhang, Xiaofeng,Zheng, Xianhu,Kuang, Youyi,Sun, Xiaowen,Feng, Jianxin,Li, Chuangju,Yu, Juhua,Xu, Peng. 2014

[8]Use and exchange of aquatic resources relevant for food and aquaculture: common carp (Cyprinus carpio L.). Jeney, Zsigmond,Jian, Zhu. 2009

[9]Accumulation, histopathological effects and response of biochemical markers in the spleens and head kidneys of common carp exposed to atrazine and chlorpyrifos. Wang, Xu,Xing, Houjuan,Jiang, Yan,Xu, Shiwen,Xing, Houjuan,Sun, Gang,Wu, Hongda,Xu, Qiyou. 2013

[10]A Consensus Linkage Map Provides Insights on Genome Character and Evolution in Common Carp (Cyprinus carpio L.). Zhang, Xiaofeng,Zheng, Xianhu,Kuang, Youyi,Li, Chao,Cao, Dingchen,Lu, Cuiyun,Sun, Xiaowen,Zhang, Yan,Zhao, Zixia,Zhao, Lan,Jiang, Li,Xu, Peng. 2013

[11]Transcriptome analysis reveals the time of the fourth round of genome duplication in common carp (Cyprinus carpio). Wang, Jin-Tu,Li, Jiong-Tang,Sun, Xiao-Wen,Wang, Jin-Tu,Zhang, Xiao-Feng. 2012

[12]Identification of common carp (Cyprinus carpio) microRNAs and microRNA-related SNPs. Zhu, Ya-Ping,Xue, Wei,Wang, Jin-Tu,Wan, Yu-Mei,Xu, Peng,Zhang, Yan,Li, Jiong-Tang,Sun, Xiao-Wen,Zhu, Ya-Ping,Xue, Wei,Wang, Jin-Tu,Wang, Shao-Lin. 2012

[13]A genetic linkage map of common carp (Cyprinus carpio L.) And mapping of a locus associated with cold tolerance. Sun, XW,Liang, LQ. 2004

[14]Genome-wide characterization of Toll-like receptor gene family in common carp (Cyprinus carpio) and their involvement in host immune response to Aeromonas hydrophila infection. Gong, Yiwen,Feng, Shuaisheng,Li, Shangqi,Zhang, Yan,Zhao, Zixia,Jiang, Yanliang,Gong, Yiwen,Hu, Mou,Jiang, Yanliang,Xu, Peng. 2017

[15]Phylogeny and Evolution of Multiple Common Carp (Cyprinus carpio L.) Populations Clarified by Phylogenetic Analysis Based on Complete Mitochondrial Genomes. Dong, Chuanju,Xu, Jian,Wang, Baosen,Sun, Xiaowen,Xu, Peng,Dong, Chuanju,Xu, Jian,Wang, Baosen,Sun, Xiaowen,Xu, Peng,Dong, Chuanju,Feng, Jianxin,Jeney, Zsigmond.

[16]Protective effect of Ganoderma lucidum polysaccharide against carbon tetrachloride-induced hepatic damage in precision-cut carp liver slices. Liu, Yingjuan,Zhang, Chunyun,Yin, Guojun,Du, Jinliang,Jia, Rui,Cao, Liping,Xu, Pao,Yin, Guojun,Du, Jinliang,Jia, Rui,Cao, Liping,Xu, Pao,Yin, Guojun,Jeney, Galina,Teraoka, Hiroki.

[17]Microsatellite-centromere mapping in common carp through half-tetrad analysis in diploid meiogynogenetic families. Feng, Xiu,Wang, Xinhua,Yu, Xiaomu,Tong, Jingou,Feng, Xiu,Wang, Xinhua,Zhang, Xiaofeng,Lu, Cuiyun,Sun, Xiaowen.

[18]Duplication and differentiation of common carp (Cyprinus carpio) myoglobin genes revealed by BAC analysis. Zhao, Zi-Xia,Xu, Peng,Deng, Hai-Xia,Zhang, Yan,Xu, Li-Ming,Li, Jiong-Tang,Xu, Jian,Sun, Xiao-Wen,Cao, Ding-Chen,Kuang, You-Yi,Sun, Xiao-Wen.

[19]Diversification of the duplicated Rab1a genes in a hypoxia-tolerant fish, common carp (Cyprinus carpio). Zhao, Zi-Xia,Xu, Jian,Xu, Ru,Li, Jiong-Tang,Zhang, Yan,Xu, Peng,Sun, Xiao-Wen,Cao, Ding-Chen,Sun, Xiao-Wen.

[20]A consensus linkage map of common carp (Cyprinus carpio L.) to compare the distribution and variation of QTLs associated with growth traits. Zheng XianHu,Kuang YouYi,Lv WeiHua,Cao DingChen,Zhang XiaoFeng,Li Chao,Lu CuiYun,Sun XiaoWen,Zheng XianHu,Lu CuiYun. 2013

作者其他论文 更多>>

微信小程序