The pear genomics database (PGDB): a comprehensive multi-omics research platform for Pyrus spp.

文献类型： 外文期刊

第一作者： Chen, Shulin

作者： Chen, Shulin;Xu, Shaozhuo;Xue, Cheng;Zheng, Pengfei;Gu, Kaidi;Qiao, Zhiwen;Liu, Zhiying;Zhang, Mingyue;Sun, Manyi;Wu, Jun;Wei, Shuwei

作者机构：

关键词： Pear; Database; Genome; Transcriptome; Re-sequencing

期刊名称：BMC PLANT BIOLOGY （ 影响因子：5.3； 五年影响因子：5.9 ）

ISSN： 1471-2229

年卷期： 2023 年 23 卷 1 期

页码：

收录情况： SCI

摘要： Background Pears are among the most important temperate fruit trees in the world, with significant research efforts increasing over the last years. However, available omics data for pear cannot be easily and quickly retrieved to enable further studies using these biological data. Description Here, we present a publicly accessible multi-omics pear resource platform, the Pear Genomics Database (PGDB). We collected and collated data on genomic sequences, genome structure, functional annotation, transcription factor predictions, comparative genomics, and transcriptomics. We provide user-friendly functional modules to facilitate querying, browsing and usage of these data. The platform also includes basic and useful tools, including JBrowse, BLAST, phylogenetic tree building, and additional resources providing the possibility for bulk data download and quick usage guide services. Conclusions The Pear Genomics Database (PGDB, http://pyrusgdb.sdau.edu.cn) is an online data analysis and query resource that integrates comprehensive multi-omics data for pear. This database is equipped with user-friendly interactive functional modules and data visualization tools, and constitutes a convenient platform for integrated research on pear.

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