A genomic perspective on the important genetic mechanisms of upland adaptation of rice

文献类型： 外文期刊

第一作者： Lyu, Jun

作者： Lyu, Jun;Gou, Zhiheng;Wang, Wen;Li, Baoye;Zhang, Shilai;Zhang, Jing;Tao, Dayun;Huang, Wangqi;Hu, Fengyi;He, Weiming;Meng, Liyun;Li, Xin

作者机构：

关键词： Upland rice;Upland adaptation;Genetic mechanisms;Phylogenetics;Population structure;Artificial selection

期刊名称：BMC PLANT BIOLOGY （ 影响因子：4.215； 五年影响因子：4.96 ）

ISSN： 1471-2229

年卷期： 2014 年 14 卷

页码：

收录情况： SCI

摘要： Background: Cultivated rice consists of two important ecotypes, upland and irrigated, that have respectively adapted to either dry land or irrigated cultivation. Upland rice, widely adopted in rainfed upland areas in virtue of its little water requirement, contains abundant untapped genetic resources, such as genes for drought adaptation. With water shortage exacerbated and population expanding, the need for breeding crop varieties with drought adaptation becomes more and more urgent. However, a previous oversight in upland rice research reveals little information regarding its genetic mechanisms for upland adaption, greatly hindering progress in harnessing its genetic resources for breeding and cultivation. Results: In this study, we selected 84 upland and 82 irrigated accessions from all over the world, phenotyped them under both irrigated and dry land environments, and investigated the phylogenetic relations and population structure of the upland ecotype using whole genome variation data. Further comparative analysis yields a list of differentiated genes that may account for the phenotypic and physiological differences between upland and irrigated rice. Conclusions: This study represents the first genomic investigation in a large sample of upland rice, providing valuable gene list for understanding upland rice adaptation, especially drought-related adaptation, and its subsequent utilization in modern agriculture.

分类号：

  • 相关文献

[1]Genetic resources of primitive upland rice in Laos. Ishikawa, R,Yamanaka, S,Kanyavong, K,Fukuta, Y,Sato, YI,Tang, L,Sato, T. 2002

[2]Influence of two allelochemicals from Ageratina adenophora Sprengel on ABA, IAA and ZR contents in roots of upland rice seedlings. Liu, Wan-Xue,Guo, Jianying,Yang, Guo-Qing.

[3]Genealogical analysis of IRAT upland rice varieties. Hu, FY,Tao, DY,Yang, GF,Yang, JY. 1997

[4]Different maternal origins of Japanese lowland and upland rice populations. Ishikawa, R,Sato, YI,Tang, T,Nakamura, I. 2002

[5]Introduction and utilization of IRAT/CIRAD upland rice cultivars. Tao, DY,Hu, FY,Yang, GF,Yang, JY. 1997

[6]Farmers' Adoption of Improved Upland Rice Technologies for Sustainable Mountain Development in Southern Yunnan. Wang, Huaiyu,Pandey, Sushil,Velasco, Lourdes E.,Hu, Fengyi,Xu, Peng,Zhou, Jiawu,Li, Jing,Deng, Xianneng,Feng, Lu,Tao, Dayun,Wen, Lu,Li, Jian,Li, Yun,Ding, Shijun.

[7]QTL mapping of the root traits and their correlation analysis with drought resistance using DH lines from paddy and upland rice cross. Mu, P,Li, ZC,Li, CP,Zhang, HL,Wu, CM,Li, C,Wang, XK.

[8]QTL mapping for fiber quality traits across multiple generations and environments in upland cotton. Fu-Ding Sun,Jian-Hong Zhang,Shu-Fang Wang,Wan-Kui Gong,Yu-Zhen Shi,Ai-Ying Liu,Jun-Wen Li,Ju-Wu Gong,Hai-Hong Shang,You-Lu Yuan.

[9]Analysis of Fitness Predominance for Gaoyou Duck's Double Yolk Egg. Zhang, Tangjie,Chang, Hong,Li, Hui-Fang,Chen, Kuanwei,Zhao, Yonggao,Xuec, Minkai,Zhang, Shengfu. 2011

[10]Functional markers in wheat: current status and future prospects. Liu, Yanan,He, Zhonghu,Xia, Xianchun,He, Zhonghu,Appels, Rudi.

[11]A preliminary study for identification of candidate AFLP markers under artificial selection for shell color in pearl oyster Pinctada fucata. Zou, Keshu,Zhang, Dianchang,Guo, Huayang,Zhu, Caiyan,Li, Min,Jiang, Shigui,Zou, Keshu,Zhang, Dianchang,Li, Min,Jiang, Shigui.

[12]Genome-wide association mapping of QTL underlying seed oil and protein contents of a diverse panel of soybean accessions. Li, Ying-hui,Hong, Hui-long,Li, Hui-hui,Liu, Zhang-xiong,Tian, Yun,Li, Yan-fei,Qiu, Li-juan,Reif, Jochen C.,Ma, Yan-song,Li, Jun,Li, Wen-bin. 2018

[13]Evidence of balancing selection in multiple indigenous chicken populations. Arlud, S.,Zeng, S. C.,Arlud, S.,Arlud, S.,E, G. X.. 2016

[14]A non-synonymous SNP within the isopentenyl transferase 2 locus is associated with kernel weight in Chinese maize inbreds (Zea mays L.). Weng, Jianfeng,Liu, Changlin,Hao, Zhuanfang,Li, Mingshun,Zhang, Degui,Ci, Xiaoke,Li, Xinhai,Zhang, Shihuang,Li, Bo,Wang, Hongwei,Yang, Xiaoyan. 2013

[15]OsLG3 contributing to rice grain length and yield was mined by Ho-LAMap. Xiong, Haiyan,Zhu, Xiaoyang,Zhang, Hongliang,Miao, Jinli,Zhang, Zhanying,Yao, Guoxin,Zhang, Qiang,Pan, Yinghua,Wang, Xin,Rashid, M. A. R.,Li, Jinjie,Li, Zichao,Li, Huihui,Wang, Wensheng,Gao, Yongming,Li, Zhikang,Tang, Zuoshun,Yang, Weicai,Fu, Xiangdong,Pan, Yinghua. 2017

[16]Molecular footprints of domestication and improvement in soybean revealed by whole genome re-sequencing. Li, Ying-hui,Yan, Long,Qi, Xiao-tian,Zhang, Le,Chang, Ru-zhen,Guo, Yong,Wang, Xiao-bo,Guan, Rong-xia,Liu, Yu-lin,Jin, Long-guo,Liu, Zhang-xiong,Zhang, Li-juan,Wang, Ke-jing,Qiu, Li-juan,Zhao, Shan-cen,Li, Dong,Li, Jun,Guo, Xiao-sen,He, Wei-ming,Liang, Qin-si,Ye, Chen,Tao, Yong,Wang, Jun-yi,Zhang, Xiu-qing,Chen, Jie,Nielsen, Rasmus,Li, Rui-qiang,Wang, Jian,Wang, Jun,Ma, Jian-xin,Yan, Long,Zhang, Meng-chen,Tao, Yong,Nielsen, Rasmus,Wang, Jun,Wang, Jun-yi,Nielsen, Rasmus,Nielsen, Rasmus,Chen, Peng-yin,Li, Wen-bin,Reif, Jochen C.,Purugganan, Michael,Purugganan, Michael. 2013

[17]Gene duplication confers enhanced expression of 27-kDa gamma-zein for endosperm modification in quality protein maize. Liu, Hongjun,Sun, Chuanlong,Zheng, Xixi,Yuan, Ningning,Li, Changsheng,Zhang, Zhiyong,Deng, Yiting,Wang, Jiechen,Wu, Yongrui,Shi, Junpeng,Lai, Jinsheng,Shi, Junpeng,Lai, Jinsheng,Gong, Hao,Huang, Xuehui,Feng, Qi,Han, Bin,Fan, Xingming,Qiu, Fazhan,Pan, Guangtang,Pan, Guangtang.

[18]Pedigree-based analysis of derivation of genome segments of an elite rice reveals key regions during its breeding. Zhou, Degui,Wang, Chongrong,Li, Hong,Li, Kanghuo,Zhou, Shaochuan,Chen, Wei,Lin, Zechuan,Chen, Haodong,Yu, Renbo,Zhen, Gang,He, Hang,Deng, Xing Wang,Chen, Wei,Lin, Zechuan,Chen, Haodong,Yu, Renbo,Zhen, Gang,He, Hang,Deng, Xing Wang,Chen, Wei,Chen, Haodong,Yu, Renbo,Zhen, Gang,Tang, Xiaoyan,He, Hang,Deng, Xing Wang,Zhang, Fengyun,Yi, Junliang,Zhou, Shaochuan,Liu, Yaoguang,Terzaghi, William,He, Hang,Deng, Xing Wang.

[19]Molecular analysis of grass carp (Ctenopharyngodon idella) by SRAP and SCAR molecular markers. Ding, Wei-dong,Cao, Zhe-ming,Cao, Li-ping.

[20]A case study on the genetic origin of the high oleic acid trait through FAD2-1 DNA sequence variation in safflower (Carthamus tinctorius L.). Sara Rapson,Man Wu,Shoko Okada,Alpana Das,Pushkar Shrestha,Xue-Rong Zhou,Craig Wood,Allan Green,Surinder Singh,Qing Liu. 2015

作者其他论文 更多>>

微信小程序