Genome organization and variation in the 3 '-partial sequence of garlic latent virus in China

文献类型: 外文期刊

第一作者: Chen, J

作者: Chen, J;Zheng, HY;Chen, JP;Yang, CL

作者机构:

关键词: garlic latent virus;nucleotide sequence;genome organization;variation

期刊名称:SCIENCE IN CHINA SERIES C-LIFE SCIENCES ( 影响因子:1.61; 五年影响因子:1.148 )

ISSN: 1006-9305

年卷期: 2002 年 45 卷 4 期

页码:

收录情况: SCI

摘要: Ten different isolates of a carlavirus were detected by degenerate PCR from 12 garlic samples collected from 6 provinces in China, and the complete genome sequence of the Zhejiang isolate ZJ1 and 3'-terminal sequences of 9 other isolates were determined. The RNA genome of isolate ZJ1 consisted of 8363nts excluding the 3'-poly (A) tail, and the genome organization was similar to other carlaviruses with 6 open reading frames encoding a replicase, TGB1, TGB2, TGB3, CP and NABP respectively. Sequence comparisons showed that all 10 isolates were Garlic latent virus (GarLV). The variations in the TGB2, TGB3 and NABP were more significant than those in the CP. High homology was also detected between those isolates and Shallot latent virus (ShLV). Phylogenetic analysis suggested that GarLV isolates from garlic can be divided into 4 main groups and Chinese isolates belonged to each group. This is the first reported molecular analysis of members of the genus Carlavirus in China.

分类号:

  • 相关文献

[1]DEVELOPMENT OF MICROSATELLITE MARKERS IN KMERIA SEPTENTRIONALIS (MAGNOLIACEAE), AN ENDANGERED CHINESE TREE. Lin, Yanfang,Zhang, Qiwei,Wang, Yaofang,Tang, Shaoqing,Lin, Yanfang,Tang, Shaoqing,Zeng, Liyan.

[2]Development and characterization of 12 microsatellite markers for Johnius belengerii. Ma, Chunyan,Ma, Hongyu,Ma, Lingbo,Shen, Anglv,Gao, Lujiao.

[3]Myceligenerans halotolerans sp. nov., an actinomycete isolated from a salt lake, and emended description of the genus Myceligenerans. Tang, Shu-Kun,Li, Wen-Jun,Tang, Shu-Kun,Li, Wen-Jun,Wang, Yun,Li, Zhi,Lou, Kai,Li, Zhi,Mao, Pei-Hong,Jin, Xiang,Klenk, Hans-Peter,Zhang, Li-Xin,Li, Wen-Jun.

[4]Complete Genome Sequences of Brucella melitensis Strains M28 and M5-90, with Different Virulence Backgrounds. Bu, Zhigao.

[5]A DNA-launched reverse genetics system for rabbit hemorrhagic disease virus reveals that the VP2 protein is not essential for virus infectivity. Liu, Guangqing,Ni, Zheng,Yun, Tao,Yu, Bin,Chen, Liu,Zhao, Wei,Hua, Jionggang,Chen, Jianping.

[6]Complete mitochondrial genome of summer flounder Paralichthys dentatus (Pleuronectiformes, Paralichthyidae). Xu, Yongjiang,Liu, Xuezhou,Shi, Bao,Wang, Bin,Xu, Yongjiang,Liu, Xuezhou,Shi, Bao,Wang, Bin. 2016

[7]Complete nucleotide sequence and genome organization of a Chinese isolate of Tobacco vein distorting virus. Chen, Jian-ping,Mo, Xiao-han,Chen, Jian-ping,Mo, Xiao-han,Chen, Zheng-bin. 2010

[8]Characterization and Distribution Analysis of a Densovirus Infecting Myzus persicae nicotianae ( Hemiptera: Aphididae). Tang, Shihao,Song, Xueru,Wang, Xinwei,Wang, Xiufang,Xu, Pengjun,Ren, Guangwei,Xue, Lin.

[9]The complete sequence of a sugarcane mosaic virus isolate causing maize dwarf mosaic disease in China. Cheng, Y,Chen, J,Chen, JP. 2002

[10]Development, characterization, and cross-species/genera transferability of SSR markers for rubber tree (Hevea brasiliensis). Yu, Fei,Feng, Su-Ping,Wang, Jing-Yi,Li, Wei-Guo,Yu, Fei,Wang, Jing-Yi,Feng, Su-Ping,Wu, Yao-Ting,Wang, Bao-Hua.

[11]CottonFGD: an integrated functional genomics database for cotton. Zhu, Tao,Liang, Chengzhen,Meng, Zhigang,Sun, Guoqing,Meng, Zhaoghong,Guo, Sandui,Zhang, Rui. 2017

[12]A Phylogenetic Analysis of Chloroplast Genomes Elucidates the Relationships of the Six Economically Important Brassica Species Comprising the Triangle of U. Li, Peirong,Zhang, Shujiang,Li, Fei,Zhang, Shifan,Zhang, Hui,Wang, Xiaowu,Sun, Rifei,Li, Peirong,Bonnema, Guusje,Borm, Theo J. A.. 2017

[13]Variation in two PPO genes associated with polyphenol oxidase activity in seeds of common wheat. Chang, Cheng,Zhang, Hai-Ping,Xu, Jie,You, Ming-Shan,Li, Bao-Yun,Liu, Guang-Tian. 2007

[14]An Assessment of Genetic Diversity of Yield-Related Traits of Saccharum spontaneum from Yunnan Province, China. Xu, Chaohua,Su, Huosheng,Liu, Hongbo,Lu, Xin,Li, Xujuan,Li, Chunjia,Lin, Xiuqin,Mao, Jun,Zi, Qiuyan,Liu, XinLong. 2017

[15]Natural Variation of Leaf Thickness and Its Association to Yield Traits in indica Rice. Liu Chuan-guang,Zhou Xin-qiao,Chen Da-gang,Li Li-jun,Li Ju-chang,Chen You-ding. 2014

[16]Deep resequencing reveals allelic variation in Sesamum indicum. Wang, Linhai,Zhang, Yanxin,Li, Donghua,Wei, Xin,Ding, Xia,Zhang, Xiurong,Han, Xuelian,Han, Xuelian. 2014

[17]Variations of main quality components of tea genetic resources [Camellia sinensis (L.) O. Kuntze] preserved in the China National Germplasm Tea Repository. Chen, L,Zhou, ZX. 2005

[18]Phylogenetic relationships of the glycoprotein gene of bovine ephemeral fever virus isolated from mainland China, Taiwan, Japan, Turkey, Israel and Australia. Zheng, Fuying,Qiu, Changqing. 2012

[19]Beryllium-7 in near-surface atmospheric aerosols in mid-latitude (40A degrees N) city Beijing, China. Tan, Keyan,Yang, Yongliang,Zhu, Xiaohua,Chen, Shu,Jiao, Xingchun,Gai, Nan,Huang, Yi,Li, Yong,Yu, Hanqing. 2013

[20]Morphological Diversity in Native Apricot Germplasm Resources of China and Grading Standards for the Foliar and Fruit Traits. Sun Haoyuan,Zhang Junhuan,Wang Yuzhu,Jiang Fengchao. 2011

作者其他论文 更多>>