Quantitative trait loci analysis and genome-wide comparison for silique related traits in Brassica napus

文献类型： 外文期刊

第一作者： Wang, Xiaodong

作者： Wang, Xiaodong;Chen, Li;Chao, Hongbo;Li, Maoteng;Wang, Xiaodong;Chen, Li;Xiang, Jun;Gan, Jianping;Wang, Aina;Wang, Hao;Tian, Jianhua;Zhao, Xiaoping;Zhao, Yajun;Zhao, Weiguo

作者机构：

关键词： Brassica napus;Silique traits;QTL;Comparative mapping;Candidate genes

期刊名称：BMC PLANT BIOLOGY （ 影响因子：4.215； 五年影响因子：4.96 ）

ISSN： 1471-2229

年卷期： 2016 年 16 卷

页码：

收录情况： SCI

摘要： Background: Yield of rapeseed is determined by three components: silique number, seed number per silique and thousand seed weight. Seed number per silique and thousand seed weight are influenced by silique length, seed density, silique breadth, silique thickness and silique volume. Some QTLs for silique traits have been reported in B. napus, however, no studies have focused on the six agronomic traits (seed number per silique, silique length, silique breadth, silique thickness, seed density and silique volume) simultaneously, and the genetic determinism of such complex traits have not been fully elucidated. Results: In this study, the six silique traits were evaluated using 348 lines of a doubled haploid population, the KN population. The results showed that 2, 4, 1, 1 and 2 QTLs explaining > 10 % of phenotypic variation were obtained for silique length, silique breadth, silique thickness, seed number per silique and silique volume, respectively. Notably, three major effect QTLs (cqSB-C6-1, cqSB-C6-2 and cqSV-C6-3) were identified in at least three environments, and 17 unique QTLs controlling at least two traits were obtained. A high-density consensus map containing 1225 markers was constructed for QTL comparison by combining the KN map with other five published maps. The comparative results revealed that 14, 13 and 11 QTLs for silique breadth, silique thickness and silique volume might be the potential new QTLs because few QTLs for these traits were reported in B. napus. In addition, potential new QTLs for silique length (11), seed number per silique (6) and seed density (5) were also identified. Twenty-five candidate genes underlying 27 QTLs for silique related traits were obtained. Conclusions: This study constructed QTL analysis in B. napus, and obtained 60 consensus QTLs for six silique related traits. The potential new QTLs will enhance our understanding of the genetic control of silique traits, and the stable QTLs provided the targets for improving seed yield in future. These findings provided comprehensive insights into the genetic network affecting silique traits at QTL level in B. napus.

分类号：

  • 相关文献

[1]Genetic mapping and QTL analysis for body weight in Jian carp (Cyprinus carpio var. Jian) compared with mirror carp (Cyprinus carpio L.). Gu Ying,Lu Cuiyun,Zhang Xiaofeng,Li Chao,Sun Xiaowen,Lu Cuiyun,Yu Juhua. 2015

[2]Genome-Wide Association and Transcriptome Analyses Reveal Candidate Genes Underlying Yield-determining Traits in Brassica napus. Lu, Kun,Peng, Liu,Zhang, Chao,Lu, Junhua,Yang, Bo,Xiao, Zhongchun,Liang, Ying,Xu, Xingfu,Qu, Cunmin,Zhang, Kai,Liu, Liezhao,Li, Jiana,Peng, Liu,Zhang, Chao,Zhu, Qinlong,Fu, Minglian,Yuan, Xiaoyan. 2017

[3]Genome-Wide Identification of QTL for Seed Yield and Yield-Related Traits and Construction of a High-Density Consensus Map for QTL Comparison in Brassica napus. Zhao, Weiguo,Wang, Hao,Tian, Jianhua,Li, Baojun,Zhao, Weiguo,Wang, Hao,Chen, Li,Chao, Hongbo,Li, Maoteng,Wang, Xiaodong,Long, Yan,Xiang, Jun,Gan, Jianping,Li, Maoteng,Liang, Wusheng. 2016

[4]QTL Mapping by Whole Genome Re-sequencing and Analysis of Candidate Genes for Nitrogen Use Efficiency in Rice. Xia, Xiuzhong,Zhang, Zongqiong,Nong, Baoxuan,Zeng, Yu,Deng, Guofu,Li, Danting,Xiong, Faqian,Wu, Yanyan,Gao, Ju. 2017

[5]High-resolution mapping and characterization of qRgls2, a major quantitative trait locus involved in maize resistance to gray leaf spot. Xu, Ling,Zhang, Yan,Zhu, Mang,Zhong, Tao,Xu, Mingliang,Shao, Siquan,Chen, Wei,Tan, Jing,Fan, Xingming. 2014

[6]QTL Mapping by SLAF-seq and Expression Analysis of Candidate Genes for Aphid Resistance in Cucumber. Liang, Danna,Chen, Minyang,Qi, Xiaohua,Xu, Qiang,Zhou, Fucai,Chen, Xuehao,Liang, Danna. 2016

[7]A dense SNP genetic map constructed using restriction site-associated DNA sequencing enables detection of QTLs controlling apple fruit quality. Sun, Rui,Chang, Yuansheng,Wang, Yi,Li, Hui,Wu, Ting,Zhang, Xinzhong,Han, Zhenhai,Yang, Fengqiu,Zhao, Yongbo,Chen, Dongmei. 2015

[8]Genetic analysis of flag leaf size and candidate genes determination of a major QTL for flag leaf width in rice. Zhang, Bin,Ye, Weijun,Ren, Deyong,Tian, Peng,Peng, Youlin,Gao, Yang,Ruan, Banpu,Wang, Li,Zhang, Guangheng,Guo, Longbiao,Qian, Qian,Gao, Zhenyu. 2015

[9]New insights into the genetic networks affecting seed fatty acid concentrations in Brassica napus. Wang, Xiaodong,Yin, Yongtai,Gan, Lu,Yu, Longjiang,Li, Maoteng,Long, Yan,Zhang, Chunyu,Meng, Jinling,Long, Yan,Wang, Xiaodong,Liu, Liezhao. 2015

[10]Identification of the Relationship between Oil Body Morphology and Oil Content by Microstructure Comparison Combining with QTL Analysis in Brassica napus. Gu, Jianwei,Chao, Hongbo,Li, Maoteng,Gu, Jianwei,Xiang, Jun,Gan, Jianping,Li, Maoteng,Wang, Hao,Li, Yonghong,Li, Dianrong,Lu, Guangyuan,Zhang, Xuekun,Long, Yan. 2017

[11]Meta-analysis of constitutive QTLs for disease resistance in maize and its synteny conservation in the rice genome. Zhao, L.,Wang, Q. Y.,Liu, H. J.,Zhang, C. X.,Li, X. H.. 2015

[12]A genetic linkage map and comparative genome analysis of common carp (Cyprinus carpio L.) using microsatellites and SNPs. Zheng, Xianhu,Kuang, Youyi,Zhang, Xiaofeng,Lu, Cuiyun,Cao, Dingchen,Li, Chao,Sun, Xiaowen,Zheng, Xianhu. 2011

[13]Quantitative trait loci for flowering time and morphological traits in multiple populations of Brassica rapa. Lou, Ping,Zhao, Jianjun,Del Carpio, Dunia Pino,Bonnema, Guusje,Zhao, Jianjun,Shen, Shuxing,Song, Xiaofei,Zhao, Jianjun,Wang, Xiaowu,Kim, Jung Sun,Jin, Mina,Zhao, Jianjun,Koornneef, Maarten,Zhao, Jianjun,Vreugdenhil, Dick,Koornneef, Maarten. 2007

[14]A Consensus Linkage Map Provides Insights on Genome Character and Evolution in Common Carp (Cyprinus carpio L.). Zhang, Xiaofeng,Zheng, Xianhu,Kuang, Youyi,Li, Chao,Cao, Dingchen,Lu, Cuiyun,Sun, Xiaowen,Zhang, Yan,Zhao, Zixia,Zhao, Lan,Jiang, Li,Xu, Peng. 2013

[15]A 1,681-locus consensus genetic map of cultivated cucumber including 67 NB-LRR resistance gene homolog and ten gene loci. Yang, Luming,Li, Dawei,Li, Yuhong,Weng, Yiqun,Li, Dawei,Li, Yuhong,Gu, Xingfang,Huang, Sanwen,Garcia-Mas, Jordi,Weng, Yiqun. 2013

[16]Syntenic relationships between cucumber (Cucumis sativus L.) and melon (C. melo L.) chromosomes as revealed by comparative genetic mapping. Li, Dawei,Cuevas, Hugo E.,Yang, Luming,Li, Yuhong,Zalapa, Juan,He, Xiaoming,Weng, Yiqun,Li, Dawei,Li, Yuhong,Gong, Zhenhui,Cuevas, Hugo E.,Garcia-Mas, Jordi,Zalapa, Juan,Weng, Yiqun,Staub, Jack E.,Luan, Feishi,Reddy, Umesh,He, Xiaoming. 2011

[17]GA-20 oxidase as a candidate for the semidwarf gene sdw1/denso in barley. Jia, Qiaojun,Jia, Qiaojun,Westcott, Sharon,Lance, Reg,Li, Chengdao,Zhang, Jingjuan,Westcott, Sharon,Zhang, Xiao-Qi,Li, Chengdao,Bellgard, Mathew. 2009

[18]Genetic linkage map of Lolium multiflorum Lam. constructed from a BC1 population derived from an interspecific hybridization, L. multiflorum x Lolium temulentum L. x L. temulentum. Guan, Xuanli,Tan, Lubin,Fu, Yongcai,Cai, Hongwei,Guan, Xuanli,Tan, Lubin,Fu, Yongcai,Cai, Hongwei,Hirata, Mariko,Yuyama, Nana,Cai, Hongwei,Ding, Chenglong,Xu, Nengxiang,Tan, Lubin,Wang, Jianping.

[19]Fine mapping and identification of candidate genes for a QTL affecting Meloidogyne incognita reproduction in Upland cotton. Kumar, Pawan,He, Yajun,Singh, Rippy,Shen, Xinlian,Chee, Peng W.,Davis, Richard F.,Guo, Hui,Paterson, Andrew H.,Peterson, Daniel G.,Nichols, Robert L.,Shen, Xinlian,He, Yajun. 2016

[20]Transcriptome analysis of genes involved in anthocyanins biosynthesis and transport in berries of black and white spine grapes (Vitis davidii). Sun, Lei,Fan, Xiucai,Zhang, Ying,Jiang, Jianfu,Sun, Haisheng,Liu, Chonghuai. 2016

作者其他论文 更多>>

微信小程序