Complete genomic sequence analysis of a highly virulent isolate revealed a novel strain of Sugarcane mosaic virus

文献类型： 外文期刊

第一作者： Gao, Bo

作者： Gao, Bo;Cui, Xiao-Wen;Li, Xiang-Dong;Zhang, Chun-Qing;Miao, Hong-Qin

作者机构：

关键词： Complete genomic sequence;Phylogenetic analysis;Strain typing;Sugarcane mosaic virus;Virulence

期刊名称：VIRUS GENES （ 影响因子：2.332； 五年影响因子：2.0 ）

ISSN： 0920-8569

年卷期： 2011 年 43 卷 3 期

页码：

收录情况： SCI

摘要： Sugarcane mosaic virus (SCMV) is the most prevalent virus causing maize dwarf mosaic disease in northern China. A SCMV isolate, BD8, was obtained from the maize showing dwarf and mosaic symptoms in Baoding, China. The complete genomic sequence of BD8 is 9,576 nucleotides (nt) excluding the poly(A) tail. It contains one single open reading frame of 9,192 nt and encodes a large polyprotein of 3,063 amino acids (aa), flanked by a 5'-untranslated region (UTR) of 148 nt and a 3'-UTR of 236 nt. The entire genomic sequence of BD8 shares identities of 79.1-80.8% with those of other 13 SCMV isolates available in the GenBank at nt level, while their CP genes share identities of 76.9-82.6 and 82.8-86.9% at nt and aa levels, respectively. Phylogenetic analysis of the complete genomic sequences reveals that SCMV can be clustered to four groups: group I includes isolates from maize, group II consists of isolates from sugarcane or maize, groups III and IV contain single isolate of AU-A (AJ278405) and BD8, respectively. Thus, BD8 represents a new strain of SCMV. Furthermore analysis of the CP gene sequences of more isolates shows that BD8 is clustered to a group with the isolates from Thailand and Vietnam, which implies that isolates of this strain have been distributed in South Asia. In the greenhouse, BD8 can cause severe symptoms in all the 12 maize varieties tested with high incidence, indicating that BD8 is highly virulent.

分类号：

  • 相关文献

[1]Molecular characterization of a Chinese vaccine strain of transmissible gastroenteritis virus: mutations that may contribute to attenuation. Wang, Chengbao,Chen, Jianfei,Shi, Hongyan,Qiu, Huaji,Xue, Fei,Liu, Changming,Zhu, Yuanmao,Liu, Shengwang,Feng, Li,Almazan, Fernando,Enjuanes, Luis. 2010

[2]Pathogenesis and phylogenetic analyses of canine distemper virus strain ZJ7 isolate from domestic dogs in China. Tan, Bin,Wen, Yong-Jun,Wang, Feng-Xue,Zhang, Shu-Qin,Wang, Xiu-Dong,Hu, Jia-Xin,Shi, Xin-Chuan,Yang, Bo-Chao,Chen, Li-Zhi,Cheng, Shi-Peng,Wu, Hua. 2011

[3]Genetic characterization of an isolate of canine distemper virus from a Tibetan Mastiff in China. Li, Weike,Sun, Heting,Li, Tiansong,Liu, Yuxiu,Gao, Yuwei,Yang, Songtao,Feng, Na,Wang, Shengle,Wang, Lei,Xia, Xianzhu,Bu, Zhigao.

[4]Phylogenetic, antigenic and biological characterization of pigeon paramyxovirus type 1 circulating in China. Qiu, Xusheng,Meng, Chunchun,Zhan, Yuan,Yu, Shengqing,Li, Shichao,Ren, Tingting,Yuan, Weifeng,Xu, Shuqin,Sun, Yingjie,Tan, Lei,Song, Cuiping,Liao, Ying,Ding, Chan,Liu, Xiufan,Liu, Xiufan,Ding, Chan,Ding, Zhuang. 2017

[5]QTL mapping for resistance to SCMV in chinese maize germplasm. Zhang, SH,Li, XH,Wang, ZH,George, ML,Jeffers, D,Wang, FG,Liu, XD,Li, MS,Yuan, LX. 2003

[6]The complete sequence of a sugarcane mosaic virus isolate causing maize dwarf mosaic disease in China. Cheng, Y,Chen, J,Chen, JP. 2002

[7]Complete nucleotide sequence of a potyvirus causing maize dwarf mosaic disease in central China. Liu, X,Wang, X,Zhao, Y,Zheng, C,Zhou, G.

[8]Multiple adaptive amino acid substitutions increase the virulence of a wild waterfowl-origin reassortant H5N8 avian influenza virus in mice. Yu, Zhijun,Sun, Weiyang,Zhang, Xinghai,Xia, Xianzhu,Gao, Yuwei,Xia, Xianzhu,Gao, Yuwei,Cheng, Kaihui,Xia, Xianzhu,Gao, Yuwei. 2018

[9]Isolation and functional analysis of the pathogenicity-related gene VdPR3 from Verticillium dahliae on cotton. Zhang, Ya-Lin,Li, Zhi-Fang,Feng, Zi-Li,Feng, Hong-Jie,Zhao, Li-Hong,Shi, Yong-Qiang,Hu, Xiao-Ping,Zhu, He-Qin.

[10]LuxS/AI-2 in Streptococcus agalactiae reveals a key role in acid tolerance and virulence. Ma, Yanping,Hao, Le,Ke, Hao,Liang, Zhiling,Ma, Jiangyao,Liu, Zhenxing,Li, Yugu. 2017

[11]Genome and Molecular Characterization of a CSFV Strain Isolated from a CSF Outbreak in South China. Shen, Hai-Yan,Wang, Jia-Ying,Dong, Xiao-Ying,Zhao, Ming-Qiu,Kang, Yanmei,Li, Yin-Guang,Pei, Jing-Jing,Liao, Ming,Ju, Chun-Mei,Yi, Lin,Hu, Yongming,Chen, Jin-Ding,Shen, Hai-Yan. 2013

[12]Functional characterization of the gene FoOCH1 encoding a putative alpha-1,6-mannosyltransferase in Fusarium oxysporum f. sp cubense. Li, Min-Hui,Xie, Xiao-Ling,Lin, Xian-Feng,Shi, Jin-Xiu,Ding, Zhao-Jian,Ling, Jin-Feng,Xi, Ping-Gen,Zhou, Jia-Nuan,Jiang, Zi-De,Leng, Yueqiang,Zhong, Shaobin,Ling, Jin-Feng. 2014

[13]Studies on the Complementary Differential Varieties and Local Physiologic Races of Magnaporthe grisea in Sichuan Province. . 2009

[14]Mycosphere Essays 14: Assessing the aggressiveness of plant pathogenic Botryosphaeriaceae. Manawasinghe, I. S.,Chethana, K. W. T.,Zhang, W.,Yan, J. Y.,Li, X. H.,Manawasinghe, I. S.,Hyde, K. D.,Chethana, K. W. T.,Phillips, A. J. L.,Zhang, W.,Zhao, W. S.. 2016

[15]The Eukaryote-Like Serine/Threonine Kinase STK Regulates the Growth and Metabolism of Zoonotic Streptococcus suis. Zhang, Chunyan,Sun, Wen,Dong, Mengmeng,Liu, Wanquan,Li, Lu,Xu, Zhuofei,Zhou, Rui,Tan, Meifang,Gao, Ting,Li, Lu,Xu, Zhuofei,Zhou, Rui. 2017

[16]Characterization in biological traits of entomopathogenic nematodes isolated from North China. Ma, Juan,Chen, Shulong,Li, Xiuhua,Moens, Maurice,De Clercq, Patrick,Han, Richou,Moens, Maurice. 2013

[17]XocR, a LuxR solo required for virulence in Xanthomonas oryzae pv. oryzicola. Xu, Huiyong,Zhao, Yancun,Liu, Fengquan,Xu, Huiyong,Qian, Guoliang,Liu, Fengquan,Xu, Huiyong,Qian, Guoliang,Liu, Fengquan. 2015

[18]Determination of the complete genomic sequence and molecular biological analysis of Soybean mosaic virus. Zhang, Hongyun,Zhi, Haijian,Zhang, Siwei,Zhao, Lin,Cui, Xiaoyan,Chen, Xin. 2012

[19]Characterization of a new dog isolate of canine distemper virus from China. Qiao, J.,Meng, Q.,Chen, C.,Xia, X.,Ren, Y.,Zhang, H.,Qiao, J.,Cai, X.. 2011

[20]C-terminal region of apoptin affects chicken anemia virus replication and virulence. Wang, Yongqiang,Hu, Yonghao,Chen, Hualan,Wang, Yongqiang,Song, Xiuqing,Gao, Honglei,Wang, Xiaoyan,Gao, Yulong,Qi, Xiaole,Qin, Liting,Lin, Huan,Gao, Li,Yao, Shuai,Han, Chunyan,Wang, Xiaomei,Chen, Hualan. 2017

作者其他论文 更多>>

微信小程序