Genomic sequencing and analysis of Chilli ringspot virus, a novel potyvirus

文献类型： 外文期刊

第一作者： Gong, Dian

作者： Gong, Dian;Wang, Jian-Hua;Lin, Zhan-Song;Zhang, Shao-Yan;Zhang, Yu-Liang;Yu, Nai-Tong;Liu, Zhi-Xin;Gong, Dian;Lin, Zhan-Song;Zhang, Shao-Yan;Yu, Nai-Tong;Xiong, Zhongguo;Xiong, Zhongguo

作者机构：

关键词： ChiRSV;Potyvirus;Genome;Phylogeny;Motif

期刊名称：VIRUS GENES （ 影响因子：2.332； 五年影响因子：2.0 ）

ISSN： 0920-8569

年卷期： 2011 年 43 卷 3 期

页码：

收录情况： SCI

摘要： Chilli ringspot virus (ChiRSV), a novel potyvirus, was recently found in Hainan, China with high prevalence. The genomic sequence of the ChiRSV-HN/14 isolate was determined by sequencing overlapping cDNA segments generated by reverse transcription polymerase chain reaction with degenerate and/or specific primers. ChiRSV genome (GenBank Acc. no. JN008909) comprised of 9,571 nucleotides (nt) excluding the 3'-terminal poly (A) tail and contained a large open reading frame of 9,240 nt encoding a large polyprotein of 3,079 amino acids with predicted Mr of 349.1 kDa. A small, overlapping PIPO coding region was also found to span from nt 2,913 to 3,095, with a capacity to encode a peptide of 60 amino acids. ChiRSV shares sequence identities of only 48.5-65.4 and 42.9-68.7% with closely related potyviruses at the nucleotide and the amino acid levels, respectively. Phylogenetic analysis of the genomic sequences provided further evidence that ChiRSV is a distinct species of the Potyvirus genus. ChiRSV-HN/14 is most closely related to Tobacco vein banding mosaic virus and two other pepper-infecting potyviruses.

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