Genome-wide analysis of the PHB gene family in Glycine max (L.) Merr.

文献类型： 外文期刊

第一作者： Song, Min

作者： Song, Min;Peng, Xiangyong;Du, Caifu;Lei, Lei;Zhang, Tao;Xiang, Yang

作者机构：

关键词： Glycine max (L.) Merr.;Prohibitin domain;Gene family;Microsynteny;Expression pattern

期刊名称：GENES & GENOMICS （ 影响因子：1.839； 五年影响因子：1.329 ）

ISSN： 1976-9571

年卷期： 2017 年 39 卷 10 期

页码：

收录情况： SCI

摘要： Prohibitins (PHBs) have one SPFH domain in common and present in species ranging from prokaryotes to eukaryotes. Although a number of researches on PHBs were performed in different plant species, a systematic analysis of the PHB family in soybean is still remains uncharacterized. In the present study, 24 putative PHB genes have been first systemically identified in soybean. According to phylogenetic analysis, these GmPHBs could be classified into four groups. Gene structures and motif patterns showed high levels of conservation within the phylogenetic subgroups. Several members of this family have undergone purifying selection based on Ka/Ks analysis on duplicated PHB genes in soybean. We performed microsynteny analysis across four legume species based on the comparisons among the specific regions contained in PHB genes. As a result, numerous microsyntenic gene pairs among soybean, Medicago, Lotus and Phaseolus were identified. Most soybean PHB genes exhibited different expression levels in various tissues and developmental stages through expression analysis using publicly available RNA-seq datasets. The 11 GmPHB genes from III_B subgroup were examined by qPCR for their expression in two soybean cultivar after infection by Phytophthora sojae. Besides three GmPHB genes previous reported by us, here other four genes also were rapidly induced by P. sojae infection in the resistant genotype, while induction was very weak in the susceptible genotype. The comprehensive overview of the PHB gene family in soybean genome will provide useful information for further functional analysis of the PHB gene family in soybean.

分类号：

  • 相关文献

[1]Identification and differential expression of two isogenes encoding 1-deoxy-D-xylulose 5-phosphate reductoisomerase in Glycine max. Zhang, Man,Li, Kai,Liu, Jianyu,Yu, Deyue,Zhang, Man. 2012

[2]Genetic diversity and population structure of vegetable soybean (Glycine max (L.) Merr.) in China as revealed by SSR markers. Dong, Dekun,Fu, Xujun,Yuan, Fengjie,Zhu, Shenlong,Li, Baiquan,Yang, Qinghua,Yu, Xiaomin,Zhu, Danhua,Chen, Pengyin. 2014

[3]Seed Treatment with Uniconazole Powder Improves Soybean Seedling Growth under Shading by Corn in Relay Strip Intercropping System. Gong, Wanzhuo,Yang, Wenyu,Wan, Yan,Chen, Xiaolin,Chen, Zhongqun,Yan, Yanhong,Wang, Lanying. 2010

[4]Genome-wide identification and analysis of the growth-regulating factor family in Chinese cabbage (Brassica rapa L. ssp pekinensis). Wang, Fengde,Ding, Qian,Li, Jingjuan,Zhang, Yihui,Li, Huayin,Gao, Jianwei,Qiu, Nianwei. 2014

[5]Genome-wide characterization and comparative analysis of the MLO gene family in cotton. Xiaoyan Wang,Qifeng Ma,Lingling Dou,Zhen Liu,Renhai Peng,Shuxun Yu. 2016

[6]Genome-wide Identification and analysis of the stress-resistance function of the TPS (Trehalose-6-Phosphate Synthase) gene family in cotton. Min Mu,Xu-Ke Lu,Jun-Juan Wang,De-Long Wang,Zu-Jun Yin,Shuai Wang,Wei-Li Fan,Wu-Wei Ye. 2016

[7]Genome-wide identification, phylogeny, and expression analysis of pectin methylesterases reveal their major role in cotton fiber development. Weijie Li,Haihong Shang,Qun Ge,Changsong Zou,Juan Cai,Daojie Wang,Senmiao Fan,Zhen Zhang,Xiaoying Deng,Yunna Tan,Weiwu Song,Pengtao Li,Palanga Kibalou Koffi,Muhammad Jamshed,Quanwei Lu,Wankui Gong,Junwen Li,Yuzhen Shi,Tingting Chen,Juwu Gong,Aiying Liu,Youlu Yuan. 2016

[8]The MAPKKK Gene Family in Gossypium raimondii: Genome-Wide Identification, Classification and Expression Analysis. Zujun Yin,Junjuan Wang,Delong Wang,Weili Fan,Shuai Wang,Wuwei Ye. 2013

[9]Phenylalanine ammonia-lyase gene families in cucurbit species: Structure, evolution, and expression. Dong Chun-juan,Cao Ning,Zhang Zhi-gang,Shang Qing-mao. 2016

[10]Genome-wide analysis of the Solanum tuberosum (potato) trehalose-6-phosphate synthase (TPS) gene family: evolution and differential expression during development and stress. Xu, Yingchun,Wang, Yanjie,Jin, Qijiang,Mattson, Neil,Yang, Liu. 2017

[11]Multiple tandem duplication of the phenylalanine ammonia-lyase genes in Cucumis sativus L.. Shang, Qing-Mao,Li, Liang,Dong, Chun-Juan. 2012

[12]ANALYSIS OF MBOAT FAMILY REVEALS THE DIVERSITY OF MBOAT1 AMPLIFICATION IN SOLANACEAE. Wang, Peng,Gai, Jiangtao,Cao, Zhenmu,Wang, Peng,Gai, Jiangtao,Cao, Zhenmu,Xu, Shitao,Chen, Zhenxi,Luo, Zhaopeng,Jin, Lifeng,Li, Feng. 2015

[13]Evolutionary and functional study of the CDPK gene family in wheat (Triticum aestivum L.). Li, Ai-Li,Zhu, Yuan-Fang,Tan, Xiao-Mei,Wang, Xiang,Wei, Bo,Guo, Han-Zi,Zhang, Zeng-Lin,Chen, Xiao-Bo,Zhao, Guang-Yao,Kong, Xiu-Ying,Jia, Ji-Zeng,Mao, Long,Tan, Xiao-Mei.

[14]Bacterial expression of a Trichosanthes kirilowii defensin (TDEF1) and its antifungal activity on Fusarium oxysporum. Jian Gui-Liang,Zhang Ying-Tao,Ai Tie-Min.

[15]Genome-wide analysis of NAM-ATAF1,2-CUC2 transcription factor family in Solanum lycopersicum. Su, Hongyan,Han, Liya,Zhang, Shizhong,Yin, Yanlei,Zhu, Dongzi.

[16]Genome-scale identification of MLO domain-containing genes in soybean (Glycine max L. Merr.). Shen, Qi,Zhao, Jinming,Xiang, Yang,Shen, Qi,Du, Caifu,Xiang, Yang,Qin, Xinrong,Cao, Jinxuan. 2012

[17]Genome-wide analysis of the CaHsp20 gene family in pepper: comprehensive sequence and expression profile analysis under heat stress. Guo, Meng,Liu, Jin-Hong,Lu, Jin-Ping,Zhai, Yu-Fei,Wang, Hu,Gong, Zhen-Hui,Lu, Ming-Hui,Wang, Shu-Bin. 2015

[18]Germanium-68 as an Adequate Tracer for Silicon Transport in Plants. Characterization of Silicon Uptake in Different Crop Species. Nikolic, Miroslav,Nikolic, Nina,Liang, Yongchao,Kirkby, Ernest A.,Romheld, Volker.

[19]Genome-wide analysis of the DNA-binding with one zinc finger (Dof) transcription factor family in bananas. Dong, Chen,Hu, Huigang,Xie, Jianghui,Dong, Chen,Hu, Huigang,Xie, Jianghui.

[20]Genome-wide analysis of the calcium-dependent protein kinase gene family inGossypium raimondii. Yu Dingwei,Zhao Fengli,Pang Chaoyou,Song Meizhen,Wei Hengling,Fan Shuli,Yu Shuxun. 2015

作者其他论文 更多>>

微信小程序