您好,欢迎访问中国水产科学研究院 机构知识库!

基于RNA-seq技术的江鳕转录组SSR位点信息分析

文献类型: 中文期刊

作者: 孟玮 1 ; 蒋艳琳 2 ; 张林 3 ; 杨天燕 2 ; 周剑光 3 ;

作者机构: 1.浙江省海洋水产研究所浙江省海洋渔业资源可持续利用技术研究重点实验室农业农村部重点渔场渔业资源科学观测实验站

2.浙江海洋大学水产学院

3.中国水产科学研究院长江水产研究所

关键词: 江鳕(Lota lota);转录组;RNA-seq;SSR;位点信息

期刊名称: 淡水渔业

ISSN: 1000-6907

年卷期: 2019 年 006 期

页码: 10-14

收录情况: 北大核心 ; CSCD

摘要: 为开展江鳕(Lota lota)遗传多样性、系统分化分析,开发有效分子标记,采用转录组测序RNA-seq方法,挖掘江鳕微卫星标记.结果显示:通过聚类、从头组装和拼接,获得Unigene共计106 084条.所有的Unigene中,共识别17 619个SSR位点,包含SSR位点的Unigene序列数量为10 893条,占总Unigene的10.27%.江鳕转录组中SSR含量较为丰富,一至六核苷酸重复类型均存在.其中,单核苷酸重复类型的数量最多(7 102个),占总SSR位点数的40.31%.江鳕转录组SSR位点中,以10次重复次数最多,达2 788个位点,占总SSR位点的15.82%.江鳕转录组SSR的片段长度从10~66 bp均有分布,大部分集中在10~24 bp,占SSR总数的87.24%.

  • 相关文献

[1]基于全长转录组测序的金乌贼微卫星位点筛选与特征分析. 张金勇,何暮春,项子龙,柳淑芳,庄志猛. 2020

[2]基于转录组测序的中华鳖SSR和SNP特征分析及性别标记筛选. 雷骆,祝骏贤,陈辰,王亚坤,刘晓莉,洪孝友,于凌云,魏成清,李伟,朱新平. 2023

[3]翘嘴鳜转录组测序及SSR新标记的开发与应用. 孙海林,孙成飞,董浚键,田园园,胡婕,叶星. 2019

[4]新疆江鳕染色体核型分析和形态特征研究. 蒋艳琳,张林,王昱斌,周剑光,阿达可白克·可尔江,郭焱,杨天燕. 2019

[5]黑龙江抚远江段冬季江鳕的摄食生态研究. 邵慧丽,金洪宇,张泽鹏,迟淼,马波,李雷. 2023

[6]鼠尾藻基因表达对干露胁迫响应的初步研究. 刘福利,王飞久,孙修涛,汪文俊,梁洲瑞,马兴宇. 2014

[7]不同规格黄鳍金枪鱼红肌转录组比较分析. 闫路路,郭杰匀,赵超,王鹏飞,张博,邱丽华,陈作志. 2024

[8]黑斑原鮡(Glyptosternum maculatum)皮肤RNA-Seq数据中补体样组分分析. 张颖,马波,李宝海,尹家胜,储明星. 2022

[9]温度胁迫下银鲳转录组的de novo拼接和差异表达的分析. 施兆鸿,刘磊,廖雅丽,高权新,彭士明,张晨捷. 2016

[10]Identification of novel Est-ssr markers by transcriptome sequencing in ridgetail white prawn Exopalaemon carinicauda. Wang, Jiajia,Wang, Jiajia,Ge, Qianqian,Li, Jitao,Gao, Haiyu,Li, Jian,Zhao, Fazhen,Li, Jian,Zhao, Fazhen. 2018

[11]A genetic linkage map of marine shrimp Penaeus (Fenneropenaeus) chinensis based on AFLP, SSR, and RAPD markers. Liu Bo,Wang Qingyin,Li Jian,Liu Ping,He Yuying,Liu Bo. 2010

[12]Isolation and characterization of 10 polymorphic microsatellite loci from small yellow croaker (Pseudosciaena polyactis). Chen, Song-Lin,Xing, Shi-Chao,Xu, Gen-Bo,Liao, Xiaolin,Yang, Jing-Feng,Xing, Shi-Chao. 2009

[13]EST-SSR markers derived from and its Laminaria digitata transferable application in Saccharina japonica. Liu, Fuli,Wang, Feijiu,Liu, Fuli,Duan, Delin. 2012

[14]Characterization of 28 polymorphic SSR loci from Meretrix lamarkii Deshayes. Liu, Bo,Teng, Shuang-shuang,Chai, Xue-Liang,Shao, Yan-Qing,Xiao, Guo-Qiang,Fang, Jun,Zhang, Jiong-ming,Liu, Bo,Teng, Shuang-shuang,Chai, Xue-Liang,Shao, Yan-Qing,Xiao, Guo-Qiang,Fang, Jun,Zhang, Jiong-ming,Liu, Bo. 2014

[15]Genetic variation analysis across six life periods in a natural population of the Chinese shrimp "Fenneropenaeus chinensis" in Bohai bay using SSR markers. Zhang, Kai,Wang, Weiji,Jin, Xianshi,Zhang, Kai,Xiao, Guangxia,Song, Wenping,Gao, Yan.

[16]Isolation and characterization of 12 polymorphic microsatellite markers from ladyfish (Elops saurus Linnaeus). Sha, Zhen-Xia,Xing, Shi-Chao,Shao, Chang-Wei,Tian, Yong-Sheng,Liao, Xiao-Lin,Chen, Song-Lin,Xing, Shi-Chao.

[17]Assessment of recapture rates after hatchery release of Chinese shrimp Fenneropenaeus chinensis in Jiaozhou Bay and Bohai Bay in 2012 using pedigree tracing based on SSR markers. Wang, Weiji,Zhang, Kai,Luo, Kun,Kong, Jie,Jin, Xianshi,Zhang, Kai,Xiao, Guangxia,Song, Wenping.

[18]Isolation and characterization of polymorphic microsatellite loci from fat greenling (Hexagrammos otakii). Chen, Song-Lin,Miao, Gui-Dong,Shao, Chang-Wei,Tian, Yong-Sheng,Liao, Xiaolin. 2009

[19]Isolation and characterization of 19 EST-linked ploymorphic microsatellite loci for olive flounder (Paralichthys olivaceus). Ji, Xiang-Shan,Chen, Song-Lin,Ma, Hong-Yu,Xu, Tian-Jun,Liao, Xiao-Lin,Ji, Xiang-Shan,Jiang, Yun-Liang. 2009

[20]Isolation and characterization of polymorphic microsatellite loci from black snapper Sebastodes fuscescens (Houttuyn). Yang, Jing-Feng,Zhao, Li-Li,Shao, Chang-Wei,Ji, Xiang-Shan,Liao, Xiao-Lin,Chen, Song-Lin,Yang, Jing-Feng. 2009

作者其他论文 更多>>