Characterization of the Complete Chloroplast Genome of Hygroryza aristata (Retz.) Nees ex Wight & Arn. (Zizaniinae, Poaceae)
文献类型： 外文期刊
作者： Wang, Haoqi 1 ; Wu, Zhiqiang 3 ; Fan, Guohua 5 ; Zheng, Gang 4 ; Gu, Cuihua 4 ; Tembrock, Luke R. 6 ; Yang, Zuoren 2 ; Yang, Jiankang 7 ; Wang, Jie 4 ;
作者机构： 1.Zhengzhou Univ, State Key Lab Cotton Biol, Zhengzhou Res Base, Zhengzhou, Peoples R China
2.Chinese Acad Agr Sci, Inst Cotton Res, State Key Lab Cotton Biol, Anyang, Peoples R China
3.Chinese Acad Agr Sci, Shenzhen Branch, Guangdong Lab Lingnan Modern Agr, Genome Anal Lab,Minist Agr,Agr Genom Inst Shenzhe, Shenzhen, Peoples R China
4.Zhejiang A&F Univ, Sch Landscape & Architecture, Zhejiang Prov Key Lab Germplasm Innovat & Utiliza, Key Lab Natl Forestry & Grassland Adm Germplasm I, Hangzhou, Peoples R China
5.Shanxi Agr Univ, Shanxi Acad Agr Sci, Sorghum Res Inst, Yuci, Shanxi, Peoples R China
6.Colorado State Univ, Dept Agr Biol, Ft Collins, CO 80523 USA
7.Dali Univ, Sch Basic Med Sci, 2 Hongshen St, Dali 671000, Yunnan, Peoples R China
关键词： Crop wild relatives; Poaceae; plastome; phylogeny; aquatic plants
期刊名称：MITOCHONDRIAL DNA PART B-RESOURCES （ 影响因子：0.658； 五年影响因子：0.674 ）
ISSN：
年卷期： 2021 年 6 卷 7 期
页码：
收录情况： SCI
摘要： The complete chloroplast genome sequence of Hygroryza aristata was sequenced, assembled and published for the first time here. The chloroplast genome was 135,681 bp in length and comprised of a large single-copy (LSC, 81,532 bp) region and a small single-copy (SSC, 12,383 bp) region interspersed by two inverted repeats (IRs, 20,883 bp). Gene annotation resulted in the identification of 113 unique genes including 79 protein-coding genes, 30 transfer RNA (tRNA) genes, and four ribosomal RNA (rRNA) genes. In addition, 118 simple sequence repeats (SSRs) and 47 long repeats were identified. Phylogenetic analysis based on maximum likelihood analysis (ML) resolved the placement of H. aristata sister to a clade of Rhynchoryza subulata and Zizania.
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