Genome-wide identification of long intergenic non-coding RNAs for Ralstonia solanacearum resistance in tomato (Solanum lycopersicum)
文献类型： 外文期刊
作者： Cao, Peina 1 ; Zhan, Chuang 1 ; Yin, Junliang 1 ; Gong, Shuangjun 2 ; Ma, Dongfang 1 ; Li, Yan 1 ;
作者机构： 1.Yangtze Univ, Coll Agr, Engn Res Ctr Ecol & Agr Use Wetland, Minist Educ, Jingzhou, Peoples R China
2.Hubei Acad Agr Sci, Inst Plant Protect & Soil Sci, Key Lab Integrated Pest Management Crop Cent China, Hubei Prov Key Lab Control Crop Dis Pest & Weeds,M, Wuhan, Peoples R China
关键词： LincRNA; Ralstonia solanacearum; qRT-PCR; differentially expressed; target genes
期刊名称：FRONTIERS IN PLANT SCIENCE （ 2021影响因子：6.627； 五年影响因子：7.255 ）
ISSN： 1664-462X
年卷期： 2022 年 13 卷
收录情况： SCI
摘要： There is growing evidences indicating that long intergenic ncRNAs (lincRNAs) play key roles in plant development and stress responses. To research tomato lincRNA functions during the interaction between tomato and Ralstonia solanacearum, RNA-seq data of tomato plants inoculated with R. solanacearum was analyzed. In this study, 315 possible lincRNAs were identified from RNA-seq data. Then 23 differentially expressed lincRNAs between tomato plants inoculated with R. solanacearum and control were identified and a total of 171 possible target genes for these differentially expressed lincRNAs were predicted. Through GO and KEGG analysis, we found that lincRNA might be involved in jasmonic acid and ethylene signaling pathways to respond to tomato bacterial wilt infection. Furthermore, lincRNA may also be involved in regulating the expression of AGO protein. Subsequently, analysis of expression patterns between differentially expressed lincRNAs and adjacent mRNAs by qRT-PCR revealed that part of lincRNAs and their possible target genes exhibited positive correlation. Taken together, these results suggest that lincRNAs play potential roles in tomato against R. solanacearum infection and will provide fundamental information about the lincRNA-based plant defense mechanisms.
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