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BSA-seq and transcriptome analysis reveal GhDSA05 as a candidate gene responsible for sensitivity to defoliants in Gossypium hirsutum L.

文献类型： 外文期刊

作者： Wang, Runze 1 ; Li, Zhaofeng 1 ; Ma, Chunmei 1 ; Hou, Bin 1 ; Han, Peng 1 ; Aini, Nurimanguli 3 ; Ye, Zizhen 1 ; Zhu, Yue 1 ; Xiu, Yanwei 1 ; Nishawy, Elsayed 4 ; Yu, Yu 2 ; Nie, Xinhui 1 ; Pan, Zhenyuan 1 ;

作者机构： 1.Shihezi Univ, Key Lab Oasis Ecol Agr, Xinjiang Prod & Construction Corps, Shihezi 832003, Peoples R China

2.Xinjiang Acad Agr & Reclamat Sci, Shihezi 832000, Peoples R China

3.Kashgar Univ, Coll Modern Agr, Kashi 844000, Peoples R China

4.Desert Res Ctr, Dept Genet, Lab Genom & Genome Editing, Cairo 11735, Egypt

关键词： Upland cotton; Defoliant sensitivity; Bulked sergeant analysis-sequencing; Transcriptome

期刊名称：INDUSTRIAL CROPS AND PRODUCTS （ 影响因子：6.2； 五年影响因子：6.2 ）

ISSN： 0926-6690

年卷期： 2024 年 222 卷

页码：

收录情况： SCI

摘要： With the development of machine-harvested cotton, the application of defoliants is a key technology that can promote defoliation and reduce impurities in cotton fibers. Therefore, sensitivity to defoliants is a very important trait in machine-harvested cotton. In this study, to uncover the genetic basis of defoliant sensitivity in cotton, bulked segregant analysis by sequencing was used with a F2 2 population derived from Xinluzao 57 (XLZ57, defoliant sensitive) and Nan 2 (N2, defoliant insensitive) to mapped the quantitative trait locus (QTL) to a 3.66- Mb interval at chromosome A05. Then, 284 F2 2 individuals were used to validate and narrow the QTL to a 1.6-Mb interval and was named qSD-A05. . To identify the candidate genes, dynamic transcriptome analysis of the abscission zone (AZ) in XLZ57 and N2 after defoliant treatment was performed. A total of 132 and 142 common differentially expressed genes (DEGs) were identified at all time points in N2 and XLZ57, respectively, and were enriched in the defense response pathway and abscisic acid-activated signaling pathway. More importantly, 15 DEGs were identified in the qSD-A05 interval, among which, Ghi_A05G23601 was significantly upregulated after defoliant treatment. There were multiple variants between N2 and XLZ57, including missense and frameshift mutations. Therefore, Ghi_A05G23601 was regarded as the key candidate gene and was named GhDSA05, , which encodes a Facilitator superfamily transporter protein. To verify the function of GhDSA05, virus-induced gene silencing was performed, which showed that the GhDSA05-silenced plants exhibited decreased defoliant sensitivity. Additionally, the expression of organ abscission-related genes was downregulated in the GhDSA05-- silenced plants. In summary, GhDSA05 positively regulates the formation of AZ under defoliant treatment and promotes leaf abscission in cotton. The results of this study not only enhance our knowledge of the defoliation mechanism of cotton but also provide a target for the genetic improvement of defoliant sensitivity.

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