QTL Mapping and Diurnal Transcriptome Analysis Identify Candidate Genes Regulating Brassica napus Flowering Time
文献类型: 外文期刊
作者: Song, Jurong 1 ; Li, Bao 1 ; Cui, Yanke 1 ; Zhuo, Chenjian 1 ; Gu, Yuanguo 2 ; Hu, Kaining 1 ; Wen, Jing 1 ; Yi, Bin 1 ; She 1 ;
作者机构: 1.Huazhong Agr Univ, Coll Plant Sci & Technol, Natl Key Lab Crop Genet Improvement, Hongshan Lab, Wuhan 430070, Peoples R China
2.Xinjiang Acad Agr Sci, Inst Econ Crops, Urumqi 830091, Peoples R China
关键词: rapeseed; flowering time; QTL mapping; RNA-seq
期刊名称:INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES ( 影响因子:5.924; 五年影响因子:6.132 )
ISSN:
年卷期: 2021 年 22 卷 14 期
页码:
收录情况: SCI
摘要: Timely flowering is important for seed formation and maximization of rapeseed (Brassica napus) yield. Here, we performed flowering-time quantitative trait loci (QTL) mapping using a double haploid (DH) population grown in three environments to study the genetic architecture. Brassica 60 K Illumina Infinium (TM) single nucleotide polymorphism (SNP) array and simple sequence repeat (SSR) markers were used for genotyping of the DH population, and a high-density genetic linkage map was constructed. QTL analysis of flowering time from the three environments revealed five consensus QTLs, including two major QTLs. A major QTL located on chromosome A03 was detected specifically in the semi-winter rapeseed growing region, and the one on chromosome C08 was detected in all environments. Ribonucleic acid sequencing (RNA-seq) was performed on the parents' leaves at seven time-points in a day to determine differentially expressed genes (DEGs). The biological processes and pathways with significant enrichment of DEGs were obtained. The DEGs in the QTL intervals were analyzed, and four flowering time-related candidate genes were found. These results lay a foundation for the genetic regulation of rapeseed flowering time and create a rapeseed gene expression library for seven time-points in a day.
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