Genome-wide identification and analysis of the evolution and expression pattern of the HVA22 gene family in three wild species of tomatoes
文献类型： 外文期刊
作者： Zhao, LaiPeng 1 ; Wang, Baike 1 ; Yang, Tao 1 ; Yan, Huizhuan 2 ; Yu, Qinghui 1 ; Wang, Juan 1 ;
作者机构： 1.Xinjiang Acad Agr Sci, Inst Hort Crops, Key Lab Hort Crop Genom Res & Genet Improvement Xi, Urumqi, Xinjiang, Peoples R China
2.Xinjiang Agr Univ, Coll Hort, Urumqi, Xinjiang, Peoples R China
关键词： HVA22; Bioinformatics; Phylogenetic analysis; Abiotic stress; Wild tomato
期刊名称：PEERJ （ 影响因子：2.7； 五年影响因子：3.1 ）
ISSN： 2167-8359
年卷期： 2023 年 11 卷
页码：
收录情况： SCI
摘要： Wild tomato germplasm is a valuable resource for improving biotic and abiotic stresses in tomato breeding. The HVA22 is widely present in eukaryotes and involved in growth and development as well as stress response, such as cold, salt, drought, and biotic stress. In the present study, we identified 45 HVA22 genes in three wild species of tomatoes. The phylogenetic relationships, gene localization to chromosomes, gene structure, gene collinearity, protein interactions, and cis-acting element prediction of all 45 HVA22 genes (14 in Solanum pennellii, 15 in S. pimpinellifolium, and 16 in S. lycopersicoides) were analyzed. The phylogenetic analysis showed that the all HVA22 proteins from the family Solanaceae were divided into three branches. The identified 45 HVA22 genes were grouped into four subfamilies, which displayed similar number of exons and expanded in a fragmentary replication manner. The distribution of HVA22 genes on the chromosomes of the three wild tomato species was also highly similar. RNA-seq and qRT-PCR revealed that HVA22 genes were expressed in different tissues and induced by drought, salt, and phytohormone treatments. These results might be useful for explaining the evolution, expression patterns, and functional divergence of HVA22 genes in Lycopersicon.
- 相关文献
作者其他论文 更多>>
-
Genome-Wide Analysis of the 12-Oxo-Phytodienoic Acid Reductase Gene Family in Peanut and Functional Characterization of AhOPR6 in Salt Stress
作者：Mou, Yifei;Sun, Quanxi;Wang, Juan;Wang, Qi;Wang, Qianqian;Yan, Caixia;Yuan, Cuiling;Zhao, Xiaobo;Li, Chunjuan;Shan, Shihua;Miao, Haocui
关键词：peanut; 12-oxo-phytodienoic acid reductase; salt stress
-
GHMP gene family: identification, evolutionary and expression analysis under various exogenous hormones and abiotic stress in tomato
作者：Yang, Haitao;Bai, Xin;Muhammad, Tayeb;Yang, Tao;Jia, Chunping;Wang, Baike;Yu, Qinghui;Wang, Juan;Bai, Xin
关键词：Tomato; Bioinformatics; GHMP; Hormonal treatments; Abiotic stresses
-
SpWRKY71 is required for drought tolerance in tomato
作者：Wu, Jiaqi;Liu, Xiaoning;Wu, Jiaqi;Muhammad, Tayeb;Hu, Jiahui;Zhao, Laipeng;Wang, Juan
关键词：Tomato;
SpWRKY71 ; drought stress; virus-induced gene silencing (VIGS); gene expression -
Comprehensive analyses of the metabolome and transcriptome reveal the photosynthetic effects in Arabidopsis thaliana of SaPEPC1 gene from desert plant with single-cell C4 photosynthetic pathway
作者：Li, Caixia;Lan, Haiyan;Wang, Juan;Yu, Qinghui
关键词：Metabolome; PEPC; Photosynthetic; Suaeda aralocaspica; Transcriptome
-
Integrative Analysis of Metabolome and Transcriptome of Carotenoid Biosynthesis Reveals the Mechanism of Fruit Color Change in Tomato (Solanum lycopersicum)
作者：Hu, Jiahui;Yu, Qinghui;Hu, Jiahui;Wang, Juan;Muhammad, Tayeb;Yang, Tao;Li, Ning;Yang, Haitao;Yu, Qinghui;Wang, Baike
关键词：tomato; fruit ripening; metabolome; transcriptome; carotenoids; lycopene; ethenyl
-
Comprehensive genomic characterization and expression analysis of calreticulin gene family in tomato
作者：Muhammad, Tayeb;Yang, Tao;Wang, Baike;Yang, Haitao;Wang, Juan;Yu, Qinghui;Tuerdiyusufu, Diliaremu
关键词：tomato; CRT gene family; endoplasmic reticulum; bioinformatics; abiotic stress; gene expression
-
Involvement of Alfin-Like Transcription Factors in Plant Development and Stress Response
作者：Jin, Ruixin;Yang, Haitao;Muhammad, Tayeb;Li, Xin;Tuerdiyusufu, Diliaremu;Wang, Baike;Wang, Juan;Jin, Ruixin;Wang, Juan;Li, Xin;Tuerdiyusufu, Diliaremu
关键词：Alfin-like transcription factors; structural characteristics; growth and development; abiotic stress
