Next generation sequencing yields the complete mitochondrial genome of the darkfin hind Cephalopholis urodeta (Serranidae) from the Mischief Reef, South China Sea
文献类型： 外文期刊
作者： Liu, Ning 1 ; Sun, Dianrong 2 ; Shan, Binbin 2 ; Liu, Yan 2 ; Wang, Liangming 2 ; Huang, Yingbang 2 ; Yang, Changping 2 ;
作者机构： 1.Beijing Aquat Wildlife Rescue & Conservat Ctr, Beijing, Peoples R China
2.Chinese Acad Fishery Sci, South China Sea Fisheries Res Inst, Key Lab South China Sea Fishery Resources Explora, Minist Agr & Rural Affairs, Guangzhou, Peoples R China
3.Chinese Acad Fisheries Sci, Trop Aquaculture Res & Dev Ctr, South China Sea Fisheries Res Inst, Sanya, Peoples R China
4.South China Normal Univ, Sch Life Sci, Guangdong Prov Key Lab Hlth & Safe Aquaculture, Guangzhou, Peoples R China
关键词： Mitogenome; next generation sequencing; Cephalopholis urodeta; Mischief Reef
期刊名称：MITOCHONDRIAL DNA PART B-RESOURCES （ 影响因子：0.61； 五年影响因子：0.628 ）
ISSN：
年卷期： 2022 年 7 卷 1 期
页码：
收录情况： SCI
摘要： The complete mitochondrial genome of the Cephalopholis urodeta (Serranidae: Epinephelinae) was sequenced by next-generation sequencing method on the basis of one female specimen collected from coral reef areas at the Mischief Reef, South China Sea. The mitogenome is 16,593 bp in length, including 13 protein-coding genes, 22 tRNA genes, two rRNA genes and a D-loop region. The overall content of A + T is 55.66%, which is significantly higher than the C + G content (44.34%). Among four bases, C shows the lowest frequency (15.99%). Phylogenetic tree based on the 13 protein-coding genes was constructed for analyzing the position of C. urodeta. The results provide useful insights into further studies on population genetics and phylogenetics of groupers.
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