Identification of QTL, QTL-by-environment interactions, and their candidate genes for resistance HG Type 0 and HG Type 1.2.3.5.7 in soybean using 3VmrMLM
文献类型： 外文期刊
作者： Jiang, Haipeng 1 ; Lv, Suchen 1 ; Zhou, Changjun 2 ; Qu, Shuo 1 ; Liu, Fang 1 ; Sun, Haowen 1 ; Zhao, Xue 1 ; Han, Yingpeng 1 ;
作者机构： 1.Northeast Agr Univ, Key Lab Soybean Biol, Key Lab Soybean Biol & Breeding Genet, Chinese Agr Minist,Chinese Minist Educ, Harbin, Peoples R China
2.Heilongjiang Acad Agr Sci, Daqing Branch, Daqing, Peoples R China
关键词： soybean cyst nematode; GWAS; 3VmrMLM; QTL; candidate genes
期刊名称：FRONTIERS IN PLANT SCIENCE （ 影响因子：5.6； 五年影响因子：6.8 ）
ISSN： 1664-462X
年卷期： 2023 年 14 卷
页码：
收录情况： SCI
摘要： IntroductionSoybean cyst nematode (SCN, Heterodera glycines Ichinohe) is an important disease affecting soybean yield in the world. Potential SCN-related QTLs and QTL-by-environment interactions (QEIs) have been used in SCN-resistant breeding. MethodsIn this study, a compressed variance component mixed model, 3VmrMLM, in genome-wide association studies was used to detect QTLs and QEIs for resistance to SCN HG Type 0 and HG Type 1.2.3.5.7 in 156 different soybean cultivars materials. Results and discussionThe results showed that 53 QTLs were detected in single environment analysis; 36 QTLs and 9 QEIs were detected in multi-environment analysis. Based on the statistical screening of the obtained QTLs, we obtained 10 novel QTLs and one QEI which were different from the previous studies. Based on previous studies, we identified 101 known genes around the significant/suggested QTLs and QEIs. Furthermore, used the transcriptome data of SCN-resistant (Dongnong L-10) and SCN-susceptible (Suinong 14) cultivars, 10 candidate genes related to SCN resistance were identified and verified by Quantitative real time polymerase chain reaction (qRT-PCR) analysis. Haplotype difference analysis showed that Glyma.03G005600 was associated with SCN HG Type 0 and HG Type 1.2.3.5.7 resistance and had a haplotype beneficial to multi-SCN-race resistance. These results provide a new idea for accelerating SCN disease resistance breeding.
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