Sequence-Related Amplified Polymorphism (SRAP) Markers Based Genetic Diversity and Population Structure Analysis of Oil Palm (Elaeis guineensis Jacq.)
文献类型： 外文期刊
作者： Zhou, Lixia 1 ; Yarra, Rajesh 1 ; Cao, Hongxing 1 ; Zhao, Zhihao 1 ;
作者机构： 1.Chinese Acad Trop Agr Sci, Hainan Key Lab Trop Oil Crops Biol, Coconut Res Inst, Wenchang, Hainan, Peoples R China
关键词： Oil palm; SRAP markers; Population structure; Genetic diversity
期刊名称：TROPICAL PLANT BIOLOGY （ 影响因子：1.512； 五年影响因子：2.011 ）
ISSN： 1935-9756
年卷期： 2021 年 14 卷 1 期
页码：
收录情况： SCI
摘要： Oil palm (Elaeis guineensis Jacq.) is the key vegetable oil yielded crop and widely distributed in the southern region of China. The present study aimed at analyzing the genetic diversity and population structure of 223 oil palm accessions collected from four provinces of China by using the sequence-related amplified polymorphism (SRAP) markers. A set of 33 SRAP molecular markers were employed to analyze genetic diversity as well as population structure across 223 oil palm accessions. Out of 514 amplified bands, 487 (94.75%) bands were found to be polymorphic. The PIC value (polymorphic information content) of detected bands was from 0.38 to 0.51, with 0.46 of average. The STRUCTURE analysis categorized the 223 oil palm accessions into three subpopulations. The UPGMA based clustering classified them into three major clusters. The correlation between the population subdivisions and the genetic relationships among oil palm accessions was revealed by UPGMA and Bayesian STRUCTURE analyses. The principal coordinate analysis also confirmed a similar grouping of accessions as revealed by the UPGMA dendrogram and STRUCTURE analysis. AMOVA analysis also revealed the variance of 24% among subpopulations and 76% within subpopulations. The present investigation provided valuable information on population structure and genetic diversity of oil palm populations in China for molecular breeding research in oil palm.
- 相关文献
作者其他论文 更多>>
-
Genome-wide identification, classification and expression analysis of MYB gene family in coconut (Cocos nucifera L.)
作者：Li, Jing;Guo, Shukuan;Min Htwe, Yin;Sun, Xiwei;Zhou, Lixia;Wang, Fangyuan;Zeng, Chunru;Chen, Shuangyan;Iqbal, Amjad;Yang, Yaodong;Chen, Shuangyan;Iqbal, Amjad
关键词：MYBs; genome-wide analysis; color; RNA-seq; qPCR; coconut
-
Integrated transcriptomic and metabolomic data reveal the cold stress responses molecular mechanisms of two coconut varieties
作者：Li, Jing;Wang, Fangyuan;Sayed, Md. Abu;Shen, Xiaojun;Zhou, Lixia;Liu, Xiaomei;Sun, Xiwei;Chen, Shuangyan;Wu, Yi;Lu, Lilan;Gong, Shufang;Iqbal, Amjad;Yang, Yaodong;Chen, Shuangyan;Iqbal, Amjad
关键词：coconut; varieties; cold stress; transcriptome; metabolome
-
Oil Palm AP2 Subfamily Gene EgAP2.25 Improves Salt Stress Tolerance in Transgenic Tobacco Plants
作者：Zhou, Lixia;Cao, Hongxing;Zeng, Xianhai;Wu, Qiufei;Li, Qihong;Martin, Jerome Jeyakumar John;Fu, Dengqiang;Liu, Xiaoyu;Li, Xinyu;Li, Rui;Ye, Jianqiu;Zhou, Lixia;Cao, Hongxing;Zeng, Xianhai;Wu, Qiufei;Li, Qihong;Martin, Jerome Jeyakumar John;Fu, Dengqiang;Liu, Xiaoyu;Li, Xinyu;Li, Rui;Ye, Jianqiu
关键词：EgAP2.25 gene; oil palm; tobacco; salinity stress; physiological and biochemical indexes; stress marker genes
-
Multi-Omics Approaches in Oil Palm Research: A Comprehensive Review of Metabolomics, Proteomics, and Transcriptomics Based on Low-Temperature Stress
作者：John Martin, Jerome Jeyakumar;Song, Yuqiao;Hou, Mingming;Zhou, Lixia;Liu, Xiaoyu;Li, Xinyu;Fu, Dengqiang;Li, Qihong;Cao, Hongxing;Li, Rui;John Martin, Jerome Jeyakumar;Song, Yuqiao;Hou, Mingming;Zhou, Lixia;Liu, Xiaoyu;Li, Xinyu;Fu, Dengqiang;Li, Qihong;Cao, Hongxing;Li, Rui;Song, Yuqiao;Hou, Mingming
关键词：oil palm; low temperature; omics; abiotic stress; stress tolerance
-
Metabonomics and Transcriptomic Analysis of Free Fatty Acid Synthesis in Seedless and Tenera Oil Palm
作者：Wei, Lu;Yang, Cheng;John Martin, Jerome Jeyakumar;Li, Rui;Zhou, Lixia;Cao, Hongxing;Liu, Xiaoyu;Wei, Lu;Yang, Cheng;John Martin, Jerome Jeyakumar;Li, Rui;Zhou, Lixia;Cao, Hongxing;Liu, Xiaoyu;Wei, Lu;Cheng, Shuanghong
关键词：oil palm; metabolomics; transcriptomics; lipid synthesis; free fatty acid
-
Catalase (CAT) Gene Family in Oil Palm (Elaeis guineensis Jacq.): Genome-Wide Identification, Analysis, and Expression Profile in Response to Abiotic Stress
作者：Zhou, Lixia;John Martin, Jerome Jeyakumar;Li, Rui;Zeng, Xianhai;Wu, Qiufei;Li, Qihong;Fu, Dengqiang;Li, Xinyu;Liu, Xiaoyu;Ye, Jianqiu;Cao, Hongxing;Zhou, Lixia;John Martin, Jerome Jeyakumar;Li, Rui;Zeng, Xianhai;Wu, Qiufei;Li, Qihong;Fu, Dengqiang;Li, Xinyu;Liu, Xiaoyu;Ye, Jianqiu;Cao, Hongxing
关键词：oil palm; CAT; genome-wide; abiotic stress; qPCR
-
Visualization and quantification of coconut using advanced computed tomography postprocessing technology
作者：Lin, Shenghuang;Hu, Jinyue;Chen, Jing;Zhang, Yu;Luo, Li'an;Huang, Mengxing;Cao, Hongxing;Sun, Chengxu
关键词：
